Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54510 841 / 0 DFL1, GH3.6 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) AT4G27260 826 / 0 GH3.5, WES1 Auxin-responsive GH3 family protein (.1) AT4G37390 717 / 0 AUR3, YDK1, GH3-2, BRU6 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) AT2G14960 711 / 0 GH3.1 Auxin-responsive GH3 family protein (.1) AT2G23170 707 / 0 GH3.3 Auxin-responsive GH3 family protein (.1) AT1G59500 688 / 0 GH3.4 Auxin-responsive GH3 family protein (.1) AT1G28130 650 / 0 GH3.17 Auxin-responsive GH3 family protein (.1.2) AT2G47750 575 / 0 GH3.9 putative indole-3-acetic acid-amido synthetase GH3.9 (.1) AT1G23160 535 / 0 Auxin-responsive GH3 family protein (.1) AT5G13320 524 / 0 WIN3, GDG1, PBS3, GH3.12 HOPW1-1-INTERACTING 3, AVRPPHB SUSCEPTIBLE 3, GRETCHEN HAGEN 3.12, GH3-LIKE DEFENSE GENE 1, Auxin-responsive GH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039723 [exp] 1136 / 0 AT5G54510 855 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10014804 [exp] 819 / 0 AT5G54510 977 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10003598 [exp] 814 / 0 AT5G54510 981 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10026600 [exp] 693 / 0 AT2G14960 950 / 0.0 Auxin-responsive GH3 family protein (.1) Lus10013887 [exp] 692 / 0 AT2G14960 949 / 0.0 Auxin-responsive GH3 family protein (.1) Lus10010391 [exp] 691 / 0 AT4G37390 904 / 0.0 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) Lus10014869 [exp] 635 / 0 AT4G37390 858 / 0.0 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) Lus10005151 [exp] 376 / 4e-123 AT2G46370 784 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) Lus10003039 [exp] 374 / 2e-122 AT2G46370 784 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G151100 [exp] 846 / 0 AT5G54510 1014 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.001G410400 [exp] 846 / 0 AT5G54510 1109 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.011G129700 [exp] 837 / 0 AT5G54510 1088 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.009G092900 [exp] 739 / 0 AT2G14960 1014 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.001G298300 [exp] 729 / 0 AT2G14960 1016 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.007G050300 [exp] 711 / 0 AT2G14960 959 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.002G206400 [exp] 634 / 0 AT2G47750 865 / 0.0 putative indole-3-acetic acid-amido synthetase GH3.9 (.1) Potri.001G069000 [exp] 619 / 0 AT1G28130 901 / 0.0 Auxin-responsive GH3 family protein (.1.2) Potri.003G161300 [exp] 613 / 0 AT1G28130 910 / 0.0 Auxin-responsive GH3 family protein (.1.2) Potri.019G103500 [exp] 379 / 7e-124 AT4G03400 897 / 0.0 DWARF IN LIGHT 2, Auxin-responsive GH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF03321 [flax] [poplar] GH3 GH3 auxin-responsive promoter
Representative CDS sequence Show only first row Show all	>Lus10018510 pacid=23180518 polypeptide=Lus10018510 locus=Lus10018510.g ID=Lus10018510.BGIv1.0 annot-version=v1.0 ATGGCTGAAGGTTCATCAAGTAATAAAACAAACCAAGATGACAAGAACAAAAGAGCTCTAGAGTTCATCCAGCAAGTCACGAACAATGCCGACGAAGTCC AGACTCGAGTCCTCGCCGAAATCCTCGCCAGAAACTCTGGCGTCGAGTACCTTCAAAGGCATGGAAGCATCATCGATAAGGCCAGTTTCAAGAAGGTAAT CCCTCTGGTCACGTACGAGGATATCAAGCCGGATATCAACCGAATCGCCAATGGCGACACTTCCCCCATCCTCTGCTCCCAACCCATCTCCGAATTCTTG ACCAGTTCAGGGACGTCGGCGGGGGAGAGGAAGCTGATGCCGACGATCAACGAAGAGATGGAGAGGAAGTCACAGCTCTACAGCTTACTAATGCCGGTCA TGAACCATTTTCTCCCTGGTTTATCCACCGCCGGTAAAGGAATGTACTTCCTCTTCGTCAAATCAGAATCCATAACTCCAGCCGGTTTACTGGCTCGCCC GGTTCTAACCAGCTACTACAAGAGCCAGCATTTTGCCAACTCGATTCACTCTTCGGAGGATTCCTACACCAACTACACCAGTCCGACGGAATCAATCCTC TGCCCGGACTCTCACCAGAGCATGTACTCCCAATTACTCTGTGGTCTGGCTCGAAACACGGAAGTTGTTCGAGTCGGGTCGGTTTTTGCATCCGGGTTTA TCCGGGCAATCAAGTTTTTCGAAAAGAATTGGCAGGTTTTGTGCAATGACATTAGGAGCGGGACGGTTGACTCCAGGGTTATTACTGATTCTCGAGTTAG ATCGTCGGTGTCAAGGGTTCTAGTGGGGCCGAACCCTGGACTGGCCGATTTCGTGGAAGGGGAATGCAGGAGGGATGTGTCTTGGAGAGGGATTATTGCT AGGGTTTGGCCTAATGCTAAGTACATTGATGTGATTGTGACTGGAGCAATGTCACAATACATTCCTACACTTGATCATTATGGGAATGGTTTGCCACTTG TTTGCTCCATGTATGCTTCATCTGAGTGTTACTTTGGGCTTAACTTGAATCCTTTGTGTAAGCCTAGTGAAGTCTCCTACACACTTGTTCCGACCATGGC TTATTTCGAGTTCTTGCCCGTTGACCGAACCGTCGGATTTAGTACCGGTTCGTTAATCATGAATGGCGATGATGGCAACGACGAGACACAAGACCGGTTG GTTGATCTAGTCGATGTTCAGCTAGGTAAAGAGTATGAACTCGTTGTCACGACTTATGCAGGTCTGTATCGATACAGAGTGGGAGACATTCTCAGAGTCT CGGGGTTCAAAAACAAGGCGCCACAATTCACATTCGTATGCAGAAAGAACGTCGTTCTAAGCATCGAGTCCGACAAGACAGACGAAGTCGAGCTGCAAGA AGCGGTGACAAAAGCTGCGACGAAACACCTCTCGCCGCTAAACGCATCGCTCGTGGAATACACAAGCTACGCCGAGACATCGTCGATTCCGGGACATTAC GTCCTGTACTGGGAGATCAACAACAACAACGAGTTAACGACACATGAAGCTCCTCGGGATTCAGTTATCGAGGAATGTTGCCTCACAGTTGAGGAATCGC TCAACAGTGTTTACAGGCAGGGACGAGTTTCAGACAACTCGATCGGTCCGCTAGAGATAAGGGTGGTCGAGAATGGAACGTTTGACAAAGTCATGGACTA TGCAATCAGCCAATTAGGTGCTTCCATTAATCAGTACAAGACTCCAAGGTGTGTGAAGCAGCATGGACCATTGGTTGAGCTGCTGAATTCTAGGGTTGTG TCAAGTTCCTTCAGTCCCAAGTTACCCAAATGGGCCCCTGGTCTCAAACAATGGTCCACTGATTAA
AA sequence Show only first row Show all	>Lus10018510 pacid=23180518 polypeptide=Lus10018510 locus=Lus10018510.g ID=Lus10018510.BGIv1.0 annot-version=v1.0 MAEGSSSNKTNQDDKNKRALEFIQQVTNNADEVQTRVLAEILARNSGVEYLQRHGSIIDKASFKKVIPLVTYEDIKPDINRIANGDTSPILCSQPISEFL TSSGTSAGERKLMPTINEEMERKSQLYSLLMPVMNHFLPGLSTAGKGMYFLFVKSESITPAGLLARPVLTSYYKSQHFANSIHSSEDSYTNYTSPTESIL CPDSHQSMYSQLLCGLARNTEVVRVGSVFASGFIRAIKFFEKNWQVLCNDIRSGTVDSRVITDSRVRSSVSRVLVGPNPGLADFVEGECRRDVSWRGIIA RVWPNAKYIDVIVTGAMSQYIPTLDHYGNGLPLVCSMYASSECYFGLNLNPLCKPSEVSYTLVPTMAYFEFLPVDRTVGFSTGSLIMNGDDGNDETQDRL VDLVDVQLGKEYELVVTTYAGLYRYRVGDILRVSGFKNKAPQFTFVCRKNVVLSIESDKTDEVELQEAVTKAATKHLSPLNASLVEYTSYAETSSIPGHY VLYWEINNNNELTTHEAPRDSVIEECCLTVEESLNSVYRQGRVSDNSIGPLEIRVVENGTFDKVMDYAISQLGASINQYKTPRCVKQHGPLVELLNSRVV SSSFSPKLPKWAPGLKQWSTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54510		DFL1, GH3.6	DWARF IN LIGHT 1, Auxin-respon...		Lus10018510 [exp]	0	1
AT1G01490			Heavy metal transport/detoxifi...		Lus10014967 [exp]	1.4	0.9233
AT3G29034			unknown protein		Lus10033010 [exp]	1.7	0.9382
AT2G39200		ATMLO12, MLO12	MILDEW RESISTANCE LOCUS O 12, ...		Lus10040388 [exp]	3.0	0.9185
AT2G39725			LYR family of Fe/S cluster bio...		Lus10035952 [exp]	9.5	0.9036
					Lus10005395 [exp]	10.7	0.9144
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10012478 [exp]	15.4	0.8592
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10007038 [exp]	16.2	0.9154
AT4G25560	MYB	LAF1, ATMYB18	LONG AFTER FAR-RED LIGHT 1, my...		Lus10027458 [exp]	16.6	0.8849
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10002207 [exp]	18.0	0.9065
AT3G58190	AS2	LBD29, ASL16	ASYMMETRIC LEAVES 2-LIKE 16, l...		Lus10000613 [exp]	19.1	0.8811

Compare expression of checked genes

Lus10018510 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.