Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27280 140 / 3e-44 Calcium-binding EF-hand family protein (.1) AT5G54490 137 / 4e-43 PBP1 pinoid-binding protein 1 (.1) AT2G46600 129 / 1e-39 Calcium-binding EF-hand family protein (.1) AT3G50360 55 / 3e-10 CEN1, ATCEN2 CENTRIN 1, centrin2 (.1) AT2G27030 50 / 7e-09 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT3G22930 50 / 1e-08 CML11 calmodulin-like 11 (.1) AT5G21274 49 / 2e-08 ACAM-6, CAM6 calmodulin 6 (.1) AT2G41110 49 / 2e-08 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2) AT3G56800 49 / 2e-08 ACAM-3, CAM3 calmodulin 3 (.1) AT3G43810 49 / 5e-08 CAM7 calmodulin 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039724 [exp] 225 / 5e-78 AT4G27280 139 / 1e-43 Calcium-binding EF-hand family protein (.1) Lus10033753 [exp] 186 / 2e-62 AT4G27280 133 / 3e-41 Calcium-binding EF-hand family protein (.1) Lus10031588 [exp] 186 / 2e-62 AT4G27280 133 / 3e-41 Calcium-binding EF-hand family protein (.1) Lus10036734 [exp] 149 / 6e-48 AT5G54490 107 / 2e-31 pinoid-binding protein 1 (.1) Lus10030227 [exp] 128 / 2e-39 AT2G46600 167 / 1e-54 Calcium-binding EF-hand family protein (.1) Lus10005985 [exp] 128 / 2e-39 AT2G46600 167 / 1e-54 Calcium-binding EF-hand family protein (.1) Lus10001775 [exp] 50 / 1e-08 AT2G27030 192 / 1e-63 calmodulin 5 (.1.2.3) Lus10022589 [exp] 49 / 5e-08 AT3G43810 255 / 2e-88 calmodulin 7 (.1) Lus10027283 [exp] 49 / 6e-08 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G151000 [exp] 176 / 1e-58 AT5G54490 147 / 7e-47 pinoid-binding protein 1 (.1) Potri.019G120600 [exp] 163 / 2e-53 AT5G54490 147 / 6e-47 pinoid-binding protein 1 (.1) Potri.011G129100 [exp] 148 / 1e-47 AT4G27280 124 / 5e-38 Calcium-binding EF-hand family protein (.1) Potri.001G412077 [exp] 147 / 4e-47 AT4G27280 117 / 4e-35 Calcium-binding EF-hand family protein (.1) Potri.011G039500 [exp] 141 / 8e-45 AT4G27280 127 / 6e-39 Calcium-binding EF-hand family protein (.1) Potri.011G039600 [exp] 141 / 8e-45 AT4G27280 127 / 6e-39 Calcium-binding EF-hand family protein (.1) Potri.004G027200 [exp] 137 / 2e-43 AT5G54490 127 / 3e-39 pinoid-binding protein 1 (.1) Potri.014G101700 [exp] 129 / 6e-40 AT2G46600 181 / 3e-60 Calcium-binding EF-hand family protein (.1) Potri.002G174900 [exp] 129 / 2e-39 AT2G46600 174 / 4e-57 Calcium-binding EF-hand family protein (.1) Potri.011G125300 [exp] 124 / 3e-38 AT5G54490 122 / 5e-37 pinoid-binding protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018511 pacid=23180420 polypeptide=Lus10018511 locus=Lus10018511.g ID=Lus10018511.BGIv1.0 annot-version=v1.0 ATGGCGTCGAAAACAGGGGACTTTGAGGACCTGCTACCAGTGATGGCCGACAAGCTGGGAGGGGAAGGCTTAATCAAGGAGCTCTGCAACGGGTTCCAGC TGCTGATGGACAAGGACAGAAAGGTCATTACGCCCGCCAGCTTGAAGCGGAACGCTGCCGTTTTGGGCCTGCAGGACTTGTCCGACGCGGAGCTCGACGG GATGGTTAAAGAAGGGGACCTCGACGGCGACGGCGTTTTGAACCAGATGGAGTTCTGCGTTTTGATGTTTAGATTGAGTCCAGAGTTGATGAGGGAGTCC AGGAACTGGCTTGAAGAAGCTATTGAAGATGAATTCAGATTTTGA
AA sequence Show only first row Show all	>Lus10018511 pacid=23180420 polypeptide=Lus10018511 locus=Lus10018511.g ID=Lus10018511.BGIv1.0 annot-version=v1.0 MASKTGDFEDLLPVMADKLGGEGLIKELCNGFQLLMDKDRKVITPASLKRNAAVLGLQDLSDAELDGMVKEGDLDGDGVLNQMEFCVLMFRLSPELMRES RNWLEEAIEDEFRF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27280			Calcium-binding EF-hand family...		Lus10018511 [exp]	0	1
AT4G27280			Calcium-binding EF-hand family...		Lus10039724 [exp]	2.0	0.8983
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10022005 [exp]	3.5	0.9005
AT5G39670			Calcium-binding EF-hand family...		Lus10026301 [exp]	4.2	0.8782
AT3G29000			Calcium-binding EF-hand family...		Lus10034463 [exp]	4.5	0.8789
AT5G42290			transcription activator-relate...		Lus10034574 [exp]	6.3	0.8253
AT2G22905			Expressed protein (.1)		Lus10012094 [exp]	7.7	0.8816
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10029021 [exp]	8.9	0.8790
AT1G14860		ATNUDT18	nudix hydrolase homolog 18 (.1...		Lus10003713 [exp]	9.6	0.8400
AT1G60670			Protein of unknown function (D...		Lus10013072 [exp]	11.2	0.8487
AT2G46580			Pyridoxamine 5'-phosphate oxid...		Lus10030234 [exp]	12.6	0.8065

Compare expression of checked genes

Lus10018511 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.