Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03230 761 / 0 S-locus lectin protein kinase family protein (.1) AT4G23180 349 / 2e-107 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G21390 348 / 2e-105 B120 S-locus lectin protein kinase family protein (.1) AT4G11530 335 / 4e-102 CRK34 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (.1) AT4G23140 334 / 8e-102 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT1G11330 338 / 1e-101 S-locus lectin protein kinase family protein (.1.2) AT4G23150 333 / 1e-101 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT4G23230 328 / 2e-101 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT4G27300 333 / 5e-100 S-locus lectin protein kinase family protein (.1) AT1G11340 335 / 9e-100 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031591 [exp] 1013 / 0 AT4G03230 853 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039725 [exp] 616 / 0 AT4G03230 445 / 5e-144 S-locus lectin protein kinase family protein (.1) Lus10033752 [exp] 482 / 1e-162 AT4G03230 497 / 6e-169 S-locus lectin protein kinase family protein (.1) Lus10031592 [exp] 493 / 6e-161 AT4G03230 351 / 3e-107 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 348 / 3e-105 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 343 / 2e-103 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 341 / 1e-102 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018408 [exp] 342 / 3e-102 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10024064 [exp] 339 / 8e-102 AT1G11340 735 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G120000 [exp] 822 / 0 AT4G03230 967 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G119700 [exp] 793 / 0 AT4G03230 1025 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G119900 [exp] 786 / 0 AT4G03230 974 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G150800 [exp] 785 / 0 AT4G03230 1206 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G119600 [exp] 778 / 0 AT4G03230 983 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G027800 [exp] 358 / 9e-109 AT4G21390 941 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125151 [exp] 356 / 2e-108 AT4G27290 757 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125351 [exp] 355 / 3e-108 AT4G27290 748 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G027900 [exp] 355 / 6e-108 AT4G21390 915 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035600 [exp] 355 / 1e-107 AT4G21380 711 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10018512 pacid=23180376 polypeptide=Lus10018512 locus=Lus10018512.g ID=Lus10018512.BGIv1.0 annot-version=v1.0 ATGGAGTTTAACAAAGTCTTCACCTTTCTCACACTACTACTATTCCTCTGTTTCCTCCCTTCCCCTGTTTCCTCATCCATAACATTCACCTCCGCTACTT CTTCTTCCGCTGTCCTCGTACGTGACAGCGCCGGAGAATCTCTAATCTCCGACGGCGGAGTATTCCAGCTCGGCTTCTTCACTCCGAATCGAACCAAACT TCCATCTCGGTATTTAGGAATATGGTACAGGAATCACCCGTCGGTAATCGTCTGGGTAGCTAATCGCGAAATGGACCTCCCCGATACGACAGGGTTCCTC TGTTTCACACCGGACGGCAACCTCCAAGTCCTCGACGGAACAACAACAACCAACGATTCTTCTTACTGGTCAACTGATTTGAAACAGTTGACCGTTAATA ATTACACACTGAGTCTCCTGAATTCCGGGAACTTGATCCTGTACGCAGGAAATTCAATGGATGTGCTCTGGCAGAGCTTTGACAATCCAACGGACACTTT CCTTCCCGGGATGAAAATGGTTAGTCATCTGAATTTAAGTTCCTGGAACTCTCCCGACGATCCTTCCACCGGAGATTACCTCTTCCTGACCGACGAAACG ATGTCGCAGATCCTGAACAACTCTATCCCGTTCTGGAATTCAGCTGACCAAATTGGATCGTGTCAACTCCCGAACTTCGTAGTCGAATTCCTCTCCAATT CGTCGTCCAATCCGTTGAAATTAGCTGATATAAATCCTCCACGACTTGTGATGGGTTTCGACGGCAGGATCCAGTTTTTTGAAACGGCGAACCAAACCTC ACCATCCTGGATCACCCCTACCGACATTTGCAGCTTGGTAGCTCCCTGTGGGAGCTTCGGAAGCTGCAACGGAGGGTTCCGCGTCCCTTGCAAGTGTCTT CCTGGATTCGTGCCGAAATCCGTCGAGAATTGGGAAACAGGGGATTTCTCGGAAGGGTGCAAGAGGGTTTCTCAGACGTGTCAGAACAAGAAAGACGGGA GTACTAGTTTCTTCTTGAAGCTGAAGGTGGTGAAAGTGCAGAGGGAGACCGGTTTGAATGGAGATTTTGACGAGGAATATGAATGTAGAGAGTGGTGCTT GGGGAACTGTAATTGTCAGGGTTACTCGTTTGATCATACGACTGCTTGCAGGTTTTGGACCGATGACTTGAAGGACATTGTGGAGATTAATGGGAGTAGT GCTGCTCAGGGTACTGTCGATCTCAACGTTCGAGTCTCCATTTCGGACATAGAGTTGACAAGAAGAGATTGCAAGCCATGCGGGACTAACACCATCCCTT ATCCACTAAGCACCGGACCAACCTGTGGAGATCCAATGTACTCAAGCTTCACTTGTAACAACAGCACCGGCTTGCTTACTTTCCACGCAATCAATGCAAG CTACCCAGTGACTCGAATTGACAGATGGTTGCACAAGTTCTTCATCCAGGTCAACGATGAGTACTGCTCAGAACCAAACGTCATAGAGTTGGATCGGTCG TTACCGTTTACTACCAACGATGGTAAATGCAATGCCGAACCAGTCAATCTCAAGTTAGCCCGATTCCAGGGAGGAAAAGTGTCCAAAGAAATGGAGATCG TGTGGGAACCGCCTTCAGAGCCACTCTGTAGCTCTGAAGAGGACTGCCAGGGCTGGCTGAACTCGAGCTGTCGCGAAGTTAACGACGGGACTGGAGATTA TAAGAGGTGTTTGTGTAGTGGGAATTCGCGCTGGGTTGGGGTCAATGCTACTTGCCAGACAAATGTTTTGTCTAACCACGTCGGATCATCATCTTCAAAG AGAAGAAGACTATTGCTGTATTCCATTGTGTTTGGAATTCTTGGAGGTGTTCTGATAATGAGCTTAGCTACTGTAATACTGCAAATGAAAAGAAAAAGAA GAAAGGATGTTCAAGCTTTGACAGAGAGCAAGTATGAGAAGGAGGAGAATCTGGCATTCAGACTCTACGACGGCGAAAAGCGGGTGAAGGAGTTCATGAA CTCGACCGAGTTCGGAGAAGACGATAAGAAAGACATAGACGTTCCGTTCTTTGATTTGGAATGCATTCTTTCTGCTACAAACTTCTTCTGCCACACCAAC AAGCTCGGCCAGGGCGGTTTTGGCCCTGTTTTCAAGGGGAAGTTTCCGGGGGGACAAGAGATAGCTGTGAAGAGGCTTTCAAGTGGTTCAACGCAAGGGC TAGAAGAGTTTAAGAACGAGGTCATTTTGATCGCGAAGCTGCAGCACAGGAACCTGGTCAGGTTGCTGGGATTCTGTGTTGAAGGAAGTGAAAAGATGTT GTTGTATGAGTATATGCCTAACAAGAGCTTGGATTCCTTCATCTTCGATCGAAGTCGAAGTGTGTTGCTGAATTGGGAGGTGAGGTTCAACATCATAATG GGGATAGCTAGAGGGATGCTCTACCTCCATCATGATTCGAGGCTGACGATTGTCCATAGAGACTTGAAGACGAGCAATGTACTTCTTGACGAGGACATGA ACCCCAAGATATCGGATTTTGGCATGGCTAGAATAGTGGCGGCCAAGCAAACTGAAGTCGACACTGTTCGGAACTCTCGTGTCGGCCCATTTTTTGGTTG CGGATACATGTCTCCAGAGTATGCGCTAGATGGGAAGTTCTCAACGAAATCCGACGTTTTCAGCTTTGGAATAGTTGTTCTTGAGATCCTCATAGGCAGG AAGAACACTGGATTTTACAAGTCTGAAGATGGCATTTCCCTTGCAAGCCATGCGTGGGGTAAGTGGAGAGAGGGCAATTTAATGGAAGTGATGGAGCAGT CATTACTCGAGACATGCGATTCCAACGAGTTCACGAGGTGCGCGATCGTGGCGTTGTTGTGCGTGCAGGAGGATCCTAGCGACCGACCCACCATGGCCGA TGTCGTATTCATGCTTGGAAGCGATGCGTCGAGCCTTACTCATCCTAAAGAGCCTGCATTTTCGGTTAGGAACCATGCAGCCACGGCTCCTTCTACCAGC GTTGGGACTATGGAGATCACAACCGAATTACAAGGAAGATAG
AA sequence Show only first row Show all	>Lus10018512 pacid=23180376 polypeptide=Lus10018512 locus=Lus10018512.g ID=Lus10018512.BGIv1.0 annot-version=v1.0 MEFNKVFTFLTLLLFLCFLPSPVSSSITFTSATSSSAVLVRDSAGESLISDGGVFQLGFFTPNRTKLPSRYLGIWYRNHPSVIVWVANREMDLPDTTGFL CFTPDGNLQVLDGTTTTNDSSYWSTDLKQLTVNNYTLSLLNSGNLILYAGNSMDVLWQSFDNPTDTFLPGMKMVSHLNLSSWNSPDDPSTGDYLFLTDET MSQILNNSIPFWNSADQIGSCQLPNFVVEFLSNSSSNPLKLADINPPRLVMGFDGRIQFFETANQTSPSWITPTDICSLVAPCGSFGSCNGGFRVPCKCL PGFVPKSVENWETGDFSEGCKRVSQTCQNKKDGSTSFFLKLKVVKVQRETGLNGDFDEEYECREWCLGNCNCQGYSFDHTTACRFWTDDLKDIVEINGSS AAQGTVDLNVRVSISDIELTRRDCKPCGTNTIPYPLSTGPTCGDPMYSSFTCNNSTGLLTFHAINASYPVTRIDRWLHKFFIQVNDEYCSEPNVIELDRS LPFTTNDGKCNAEPVNLKLARFQGGKVSKEMEIVWEPPSEPLCSSEEDCQGWLNSSCREVNDGTGDYKRCLCSGNSRWVGVNATCQTNVLSNHVGSSSSK RRRLLLYSIVFGILGGVLIMSLATVILQMKRKRRKDVQALTESKYEKEENLAFRLYDGEKRVKEFMNSTEFGEDDKKDIDVPFFDLECILSATNFFCHTN KLGQGGFGPVFKGKFPGGQEIAVKRLSSGSTQGLEEFKNEVILIAKLQHRNLVRLLGFCVEGSEKMLLYEYMPNKSLDSFIFDRSRSVLLNWEVRFNIIM GIARGMLYLHHDSRLTIVHRDLKTSNVLLDEDMNPKISDFGMARIVAAKQTEVDTVRNSRVGPFFGCGYMSPEYALDGKFSTKSDVFSFGIVVLEILIGR KNTGFYKSEDGISLASHAWGKWREGNLMEVMEQSLLETCDSNEFTRCAIVALLCVQEDPSDRPTMADVVFMLGSDASSLTHPKEPAFSVRNHAATAPSTS VGTMEITTELQGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03230			S-locus lectin protein kinase ...		Lus10018512 [exp]	0	1
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10032219 [exp]	8.6	0.9035
AT5G61680			Pectin lyase-like superfamily ...		Lus10034893 [exp]	12.0	0.8836
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10039559 [exp]	15.2	0.8969
AT5G47530			Auxin-responsive family protei...		Lus10010498 [exp]	17.5	0.8900
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Lus10027227 [exp]	19.2	0.8853
AT5G49350			Glycine-rich protein family (....		Lus10016857 [exp]	36.7	0.8828
AT3G24310	MYB	MYB305, ATMYB71	MYB DOMAIN PROTEIN 71, myb dom...		Lus10014453 [exp]	37.9	0.8243
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10036289 [exp]	65.4	0.8687
AT2G43590			Chitinase family protein (.1)		Lus10035624 [exp]	68.4	0.8720
AT2G39420			alpha/beta-Hydrolases superfam...		Lus10040328 [exp]	68.5	0.8778

Compare expression of checked genes

Lus10018512 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.