Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54470 106 / 4e-28 CO B-box type zinc finger family protein (.1) AT4G27310 104 / 2e-27 CO B-box type zinc finger family protein (.1) AT3G21890 59 / 6e-11 CO B-box type zinc finger family protein (.1) AT5G24930 55 / 2e-08 CO COL4, ATCOL4 CONSTANS-like 4 (.1) AT3G21150 53 / 2e-08 CO EIP6, BBX32 EMF1-Interacting Protein 1, B-box domain protein 32, B-box 32 (.1) AT4G15248 51 / 3e-08 CO B-box type zinc finger family protein (.1) AT2G24790 52 / 6e-08 CO COL3, ATCOL3 CONSTANS-like 3 (.1.2) AT1G68190 52 / 9e-08 CO B-box zinc finger family protein (.1) AT4G15250 50 / 4e-07 CO COL11 B-box type zinc finger protein with CCT domain (.1) AT3G02380 50 / 5e-07 CO ATCOL2, COL2 CONSTANS-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039727 [exp] 282 / 2e-96 AT5G54470 118 / 1e-32 B-box type zinc finger family protein (.1) Lus10031593 [exp] 147 / 6e-44 AT4G27310 119 / 2e-33 B-box type zinc finger family protein (.1) Lus10033751 [exp] 137 / 6e-40 AT4G27310 114 / 9e-32 B-box type zinc finger family protein (.1) Lus10015097 [exp] 68 / 2e-14 AT4G15248 94 / 5e-26 B-box type zinc finger family protein (.1) Lus10031583 [exp] 67 / 5e-14 AT3G21890 96 / 1e-26 B-box type zinc finger family protein (.1) Lus10039694 [exp] 60 / 2e-11 AT4G15248 108 / 1e-31 B-box type zinc finger family protein (.1) Lus10027151 [exp] 59 / 4e-11 AT4G15248 109 / 7e-32 B-box type zinc finger family protein (.1) Lus10035257 [exp] 60 / 4e-10 AT1G68190 194 / 8e-59 B-box zinc finger family protein (.1) Lus10033380 [exp] 58 / 7e-10 AT3G21150 112 / 3e-30 EMF1-Interacting Protein 1, B-box domain protein 32, B-box 32 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G150500 [exp] 121 / 8e-34 AT4G27310 114 / 1e-31 B-box type zinc finger family protein (.1) Potri.004G026900 [exp] 112 / 5e-31 AT4G27310 109 / 2e-30 B-box type zinc finger family protein (.1) Potri.011G039700 [exp] 111 / 4e-30 AT4G27310 105 / 3e-28 B-box type zinc finger family protein (.1) Potri.001G414700 [exp] 113 / 6e-30 AT5G54470 126 / 2e-35 B-box type zinc finger family protein (.1) Potri.011G125400 [exp] 108 / 5e-28 AT5G54470 120 / 1e-32 B-box type zinc finger family protein (.1) Potri.004G027100 [exp] 100 / 1e-26 AT5G54470 97 / 4e-26 B-box type zinc finger family protein (.1) Potri.004G027000 [exp] 88 / 2e-22 AT4G27310 91 / 5e-24 B-box type zinc finger family protein (.1) Potri.010G251800 [exp] 63 / 1e-11 AT3G21150 130 / 5e-37 EMF1-Interacting Protein 1, B-box domain protein 32, B-box 32 (.1) Potri.017G039400 [exp] 60 / 2e-11 AT4G15248 100 / 3e-28 B-box type zinc finger family protein (.1) Potri.007G121100 [exp] 60 / 2e-11 AT4G15248 108 / 2e-31 B-box type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00643 [flax] [poplar] zf-B_box B-box zinc finger
Representative CDS sequence Show only first row Show all	>Lus10018513 pacid=23180458 polypeptide=Lus10018513 locus=Lus10018513.g ID=Lus10018513.BGIv1.0 annot-version=v1.0 ATGAAGAGGTGTGAGCTGTGCAAGTCTCTGGCGAGGACGTTCTGCGAATCGGATCAGGCGAGCCTCTGCTGGTCCTGCGATTCGAAGGTCCACGGGGCTA ATTTTCTGGTGGCGCGTCACTCCCGCACCTTGCTCTGTCATTTCTGTCAGTGTCCCACTCCTTGGCAAGCCGCCGGTGCAAAGCTCGGCCATACGGTGTC GTTCTGCTTGCGATGCGCTAATGGTGATACTCATGAAGCTGAAGCTGAAGCTGAGGAGGAAGAGGTAGAGAGTGGAAGTGAAGGAGAAGAGCTGGAGGAG GAAGAAGAAGAAGAACAAGAAGAAGATGATGATTTAGGAGATAATCAGGTAGTCCCGTGGTCGTCTTCCGATTCGACTCCTCCGCCGCCGGCGGAGAGTT CGTCTTCGTCGTATTACTCGTCGGATAGTGACGGTGGGGAAGCCGTCGTTTCGACGAAACGGAGGAGGGAAAGTTTAGATCTTTGCTGTTTCCCTCAGGA CGATGTCAACCGTGGATCTCCGCCGGCAAGTCAATGTATCTCAGTTGAACCGAATCCGGTCAGGCCGATGAAAAACCGGCGAACTGAACAATCGGTACTC CGTTCCAGCTCAAGATCCACGGCCATTGTGGTGAGGCTGGATCCGGCGAGCGGGGGGGAGATGGAAGCCGTTGATGAAGGAGATGCAGATGATTCACCGG ACAATAGTAGCCGTACGATCTTGGGGAGTTGA
AA sequence Show only first row Show all	>Lus10018513 pacid=23180458 polypeptide=Lus10018513 locus=Lus10018513.g ID=Lus10018513.BGIv1.0 annot-version=v1.0 MKRCELCKSLARTFCESDQASLCWSCDSKVHGANFLVARHSRTLLCHFCQCPTPWQAAGAKLGHTVSFCLRCANGDTHEAEAEAEEEEVESGSEGEELEE EEEEEQEEDDDLGDNQVVPWSSSDSTPPPPAESSSSSYYSSDSDGGEAVVSTKRRRESLDLCCFPQDDVNRGSPPASQCISVEPNPVRPMKNRRTEQSVL RSSSRSTAIVVRLDPASGGEMEAVDEGDADDSPDNSSRTILGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27310	CO		B-box type zinc finger family ...		Lus10018513 [exp]	0	1
AT3G14260			Protein of unknown function (D...		Lus10001484 [exp]	8.8	0.9327
AT5G38760			Late embryogenesis abundant pr...		Lus10003046 [exp]	12.3	0.9243
AT3G01430			unknown protein		Lus10014527 [exp]	15.2	0.9311
AT1G12440			A20/AN1-like zinc finger famil...		Lus10008912 [exp]	16.4	0.9149
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10002356 [exp]	18.7	0.9111
AT3G56200			Transmembrane amino acid trans...		Lus10028165 [exp]	23.3	0.9308
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011979 [exp]	24.9	0.9268
AT2G32150			Haloacid dehalogenase-like hyd...		Lus10004914 [exp]	25.2	0.9179
AT2G27180			unknown protein		Lus10013375 [exp]	28.1	0.9188
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10028227 [exp]	28.2	0.9259

Compare expression of checked genes

Lus10018513 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.