Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03260 486 / 1e-163 Outer arm dynein light chain 1 protein (.1.2) AT1G78230 247 / 2e-72 Outer arm dynein light chain 1 protein (.1) AT5G22320 72 / 5e-13 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT2G34680 62 / 2e-09 AIR9 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) AT5G19680 54 / 2e-07 Leucine-rich repeat (LRR) family protein (.1) AT1G61180 52 / 1e-06 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT1G07390 49 / 1e-05 AtRLP1 receptor like protein 1 (.1.2.3) AT4G35470 47 / 5e-05 PIRL4, DREB1C plant intracellular ras group-related LRR 4 (.1) AT5G45800 45 / 0.0002 MEE62 maternal effect embryo arrest 62, Leucine-rich repeat protein kinase family protein (.1) AT4G08850 45 / 0.0002 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039729 [exp] 1019 / 0 AT4G03260 429 / 2e-142 Outer arm dynein light chain 1 protein (.1.2) Lus10020932 [exp] 247 / 1e-72 AT1G78230 448 / 1e-149 Outer arm dynein light chain 1 protein (.1) Lus10033444 [exp] 246 / 1e-72 AT1G78230 450 / 8e-151 Outer arm dynein light chain 1 protein (.1) Lus10038534 [exp] 61 / 4e-09 AT2G34680 1378 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Lus10012715 [exp] 53 / 4e-07 AT5G19680 458 / 2e-163 Leucine-rich repeat (LRR) family protein (.1) Lus10016684 [exp] 52 / 2e-06 AT1G55325 733 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Lus10010891 [exp] 50 / 2e-06 AT5G19680 384 / 3e-135 Leucine-rich repeat (LRR) family protein (.1) Lus10017178 [exp] 50 / 4e-06 AT2G36570 872 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035976 [exp] 50 / 5e-06 AT4G35470 652 / 0.0 plant intracellular ras group-related LRR 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G119300 [exp] 620 / 0 AT4G03260 549 / 0.0 Outer arm dynein light chain 1 protein (.1.2) Potri.019G119500 [exp] 597 / 0 AT4G03260 521 / 3e-177 Outer arm dynein light chain 1 protein (.1.2) Potri.013G150300 [exp] 544 / 0 AT4G03260 504 / 2e-170 Outer arm dynein light chain 1 protein (.1.2) Potri.005G164000 [exp] 266 / 3e-79 AT1G78230 464 / 2e-155 Outer arm dynein light chain 1 protein (.1) Potri.002G097800 [exp] 261 / 2e-77 AT1G78230 523 / 3e-178 Outer arm dynein light chain 1 protein (.1) Potri.011G090200 [exp] 64 / 4e-10 AT2G34680 1307 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Potri.001G357700 [exp] 59 / 1e-08 AT2G34680 2236 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Potri.006G163900 [exp] 54 / 2e-07 AT5G19680 513 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.018G086200 [exp] 52 / 5e-07 AT5G19680 486 / 5e-174 Leucine-rich repeat (LRR) family protein (.1) Potri.011G068500 [exp] 52 / 1e-06 AT5G46330 505 / 1e-159 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10018514 pacid=23180445 polypeptide=Lus10018514 locus=Lus10018514.g ID=Lus10018514.BGIv1.0 annot-version=v1.0 ATGGTTAGGTTCTCGTGCTTCAATGGTCATATTCATTCATCCCAAAAATCAAAGACAACTGTTGAACAATCTATGGAGGCAATGCTGAAGGCGTTGCAAG ATTCTACTAAGGTGCAAGATGTGAAGACGTCAACAGCTCAACCTACAAGCTTAAACTCTGTATTTCTCAGGTCAAAAACAGATACTCATATTAATTATGA GGAAGTCTTGGATTCAGAGGAGATTGAGCAAACATCAGGAGTCGAGATTGATCCAGGAATCTGTCATGGAACACTGCTGAAGAGAAGTAAATCCCTAGGG GATGAATTGTGCCACGAAGGTAGGATCGATTACAACAAAACAGAAGAAGAGACGGACCAAGGTGGTTCCAGTGACTGCCCTGATCAGAACGGGTCGGGTG GAGCACGAGAAGGCAGCCCGACTAGTGAATATGATAAGGCCCCTCTATCGGAATCTGTTCAAGTCGGTTCTGATATAGTCAACGATGGATCGGTTTTCTC GGCTGGAGATTCTCATCGTTCAAACAAGGAGGTTCCCGGAAGTTGTGATAACCAGTTATTTGGACTTGGTGCTGATAATTCTGGCGTGCCTTCTCCTCCG CGTCCTACTAGGCTCGAAAGATCTCGTTCATTTCCAAACTTCAGGTCTGCCTCTCTCTCACCGGGTGCTCATACTGGATACTTAGCAGGAAAGTCAAAAT CTTGGGATGACCTACGTGGGCTGTATATGGGGTGGAAAGATCTTCCGGTTCACGAAGCTGTAACGCAATCCATACATGATAAGGATTGCAGAAGTGAAGG GAATAACTTTGAGAACCTTCCGGACGATGTGTATGATTCTTATGATTACTCTTCTCCTGCTAAAGACTGGGTGATGCCGGTTGCTGACGAGGATGAAAAC TTAGCAGAAGAACAACTCGAACGAGTAGGTGGATCTTCCATGCAGCAACCAGGCGAATATCCGAATGAAGATTTTAGATTCAGGCGAATCAAGGCATGGG TCAACGATCTTCATTCCTGCGGCCCTGTGGACGAAGTAGTTGTATTGCCTGGTATCGACGAACTAGTCAGTACCGAGCCGTCCACTGTTTCGGGCCGACC TACTACTGTTGTAAAAGTGGATGATAAAATGACTTCTTCCATGGAAGCTGCAAAGAGATATGTTCAATCTTTGAGTCCTGCAACCACCACTGCTCAACTG TCCAATCATGGCTTAGCAGTGATTCCAGCTCTTGGTGCTTTTGGTAGTTTGAGAGTGCTTAATCTGTCTGGAAACTCCGTAGCTAGAATAACTGCTGGTG TCCTTCCACGTGGACTTCACATGCTGAATCTGGCGAAGAACAACATATCTACAATCGAGGGTTTGCGGGAACTCACTCGACTACGTGTTCTGGACTTGAG CTACAACCGAATATTCAGAATCGGACACGGTCTTGGTTCGTGCTCATCCTTGAAAGAGCTATACTTGGCGGGGAACAAGATAAGCGAGGTCGAAGGTCTG CATCGTCTGCTGAAACTCACAGTCCTCGATCTGCGATTCAACAAGCTCTCGACCACCAAATGTCTCGGCCAGCTTGCAGCCAACTACAGCTCCCTACAAG CCATCAGCCTGGAAGGGAATCCGGCTCAGAAAAACGTTGGAGACGAACAGCTCAAGAAGCACTTGCAGGGACTTCTGCCGCAACTGGTTTACTTCAACAG GCAGGCAACCAAAGCCGGCACGTTAAAGGACGCAGCAGATCGGTCGGTCAGGCTGGGGATAAGTTCAAACAAATCGGTTAGGAAAGCCGGCCACGGGGTC ACTGCGTCGAGGGCGTTATCATCATCCACGCACGGTGGTCGTGCGAGTACATCCTCTCCGAAACGGTCGAAGGGGAGGCATGTTAAGCTCCCGCCGAGTG GGACTGGCAGACCGAGCGGCCATGCTCGGCCGCCAGTGCAAGGTTTGGATCTCGGCAGGAGGGGTGTGGATTTCAGAGCCGAGCTGGCTATGAGGAGGAG TAAGAGTGAAGGGAATATGGGACCTCAGTGA
AA sequence Show only first row Show all	>Lus10018514 pacid=23180445 polypeptide=Lus10018514 locus=Lus10018514.g ID=Lus10018514.BGIv1.0 annot-version=v1.0 MVRFSCFNGHIHSSQKSKTTVEQSMEAMLKALQDSTKVQDVKTSTAQPTSLNSVFLRSKTDTHINYEEVLDSEEIEQTSGVEIDPGICHGTLLKRSKSLG DELCHEGRIDYNKTEEETDQGGSSDCPDQNGSGGAREGSPTSEYDKAPLSESVQVGSDIVNDGSVFSAGDSHRSNKEVPGSCDNQLFGLGADNSGVPSPP RPTRLERSRSFPNFRSASLSPGAHTGYLAGKSKSWDDLRGLYMGWKDLPVHEAVTQSIHDKDCRSEGNNFENLPDDVYDSYDYSSPAKDWVMPVADEDEN LAEEQLERVGGSSMQQPGEYPNEDFRFRRIKAWVNDLHSCGPVDEVVVLPGIDELVSTEPSTVSGRPTTVVKVDDKMTSSMEAAKRYVQSLSPATTTAQL SNHGLAVIPALGAFGSLRVLNLSGNSVARITAGVLPRGLHMLNLAKNNISTIEGLRELTRLRVLDLSYNRIFRIGHGLGSCSSLKELYLAGNKISEVEGL HRLLKLTVLDLRFNKLSTTKCLGQLAANYSSLQAISLEGNPAQKNVGDEQLKKHLQGLLPQLVYFNRQATKAGTLKDAADRSVRLGISSNKSVRKAGHGV TASRALSSSTHGGRASTSSPKRSKGRHVKLPPSGTGRPSGHARPPVQGLDLGRRGVDFRAELAMRRSKSEGNMGPQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03260			Outer arm dynein light chain 1...		Lus10018514 [exp]	0	1
AT4G03260			Outer arm dynein light chain 1...		Lus10039729 [exp]	1.0	0.8622
AT3G55140			Pectin lyase-like superfamily ...		Lus10025290 [exp]	2.8	0.7936
AT5G56180		ATARP8	actin-related protein 8 (.1.2)		Lus10025605 [exp]	2.8	0.8355
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10002347 [exp]	5.5	0.7443
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10000988 [exp]	8.8	0.7702
AT4G25700		BCH1, B1, CHY1,...	BETA CAROTENOID HYDROXYLASE 1,...		Lus10039278 [exp]	9.1	0.6989
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10008439 [exp]	9.8	0.7766
AT5G15860		ICME, ATPCME	Isoprenylcysteine methylestera...		Lus10019156 [exp]	10.4	0.7761
AT2G44350		CSY4, ATCS	CITRATE SYNTHASE 4, Citrate sy...		Lus10019688 [exp]	10.6	0.7431
AT4G20070		ATAAH	allantoate amidohydrolase (.1)		Lus10036233 [exp]	12.8	0.6711

Compare expression of checked genes

Lus10018514 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.