Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11300 671 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT4G27290 587 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 587 / 0 ARK3 receptor kinase 3 (.1) AT1G11330 582 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G61610 574 / 0 S-locus lectin protein kinase family protein (.1) AT1G11340 554 / 4e-177 S-locus lectin protein kinase family protein (.1) AT1G61380 545 / 7e-175 SD1-29 S-domain-1 29 (.1) AT1G61390 538 / 5e-172 S-locus lectin protein kinase family protein (.1.2) AT1G11350 536 / 2e-171 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT1G11280 533 / 4e-170 S-locus lectin protein kinase family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039731 [exp] 1990 / 0 AT1G11300 1112 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10039767 [exp] 1085 / 0 AT4G27290 588 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10028782 [exp] 1045 / 0 AT4G21380 649 / 0.0 receptor kinase 3 (.1) Lus10039733 [exp] 1033 / 0 AT4G27290 615 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033743 [exp] 820 / 0 AT4G21380 608 / 0.0 receptor kinase 3 (.1) Lus10033741 [exp] 736 / 0 AT4G21380 576 / 0.0 receptor kinase 3 (.1) Lus10031603 [exp] 730 / 0 AT4G03230 558 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007603 [exp] 602 / 0 AT4G21380 942 / 0.0 receptor kinase 3 (.1) Lus10018405 [exp] 580 / 0 AT4G21380 952 / 0.0 receptor kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G134900 [exp] 673 / 0 AT4G21390 662 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G150900 [exp] 629 / 0 AT4G21390 635 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G120300 [exp] 625 / 0 AT4G21380 630 / 0.0 receptor kinase 3 (.1) Potri.001G414077 [exp] 610 / 0 AT4G27290 855 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G039200 [exp] 608 / 0 AT1G11330 864 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.001G409300 [exp] 606 / 0 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G128700 [exp] 602 / 0 AT4G27290 840 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G037100 [exp] 601 / 0 AT4G21380 982 / 0.0 receptor kinase 3 (.1) Potri.011G125601 [exp] 599 / 0 AT4G27290 914 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G039100 [exp] 599 / 0 AT1G11330 859 / 0.0 S-locus lectin protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10018516 pacid=23180439 polypeptide=Lus10018516 locus=Lus10018516.g ID=Lus10018516.BGIv1.0 annot-version=v1.0 ATGGCCCAACTCCGACTGAACTTTCCGACCATCGTCGTCTTTACTTGCTTTCTTCTCACCACCACCACCCGTCTCTGCCTCGGAGCTGACAGGATCTCTC AGAACGAAACCCTCACCGTAAACCAGACGCTAATCTCATCAAACGACAGATTCGAATTGGGTTTCTTCAATCCAGGTAACTCTTCATCTTACTACCTCGG AATCTGGTACTATCAGGTCTCCATCAGAACTGTAGTGTGGGTCGCGAACAGAGAATCCCCTCTTTCCGGAAACTCCTCCGCTGAGCTCAGAATCTCCTCC GGCGGCGGATTAGCTCTGTTCTTCAACCAATCCCAGATCTGGTCAACTTCGAGGATGGCTTCTACTTCTCCGACGGAAGCTGTTCTTCTCGAAGACGGAA ACTTCGTCTTAAGAAAAACAGATTCCTCTGAAATCGTGTGGCAGAGCTTTGAACATCCGACGAACATTTTCCTCCCGGAAGCCAAGCTCAGCCGCAGCAA AATCACCGGCGAGCATACCACAGTGGTTCCCTGGAGAGGAAATGACGATCCCGCCCCTGGGAATTTCTCCCTCCAGCTAGACCCCAACGGTACAGATCAG TTCGTGATAATCAAGGACGCATCTTCACTGTACTGGAACAGTGGAGTCTGGAATGGAAGATTCTTCACCTCAGTTCCTGAGCTGAGAACGAATTTCTCTT ACAATTTCTTCTTCATCGATAATGAAAACGAAACCTACTTCACCTATTCCTTGTACAACAAGTCAAGCATCTTCCATGTCGCGATAACCGAAGGCGGTAA CATCCAGCTTCTGTCATGGATGGAAGCTACTCAGAGATGGTTCTTAGCTTGGTCGAGGCCGAAATTGCAGTGTCAGGTTCAGCTATACTGCGGTGCATTC GGATCGTGTGATGACGAATCCACCCCTACTTGTCGTTGCCTCGAAGGATTCGTTCCGAAATCGAACGACGAGTACGATTCCAACATATTCTACAGTGGAT GCATTCGAAGATCCGAGCTTCAATGTGGTAGGAGCAACAATAACACTGATAGGTTCATTAGAGGGTATGCGGTTAGGGACACGGTTTCGGGATCCCCTGC TTCGAGATCCGCTGCGAATGTTGAGGAATGTCAATTGGTCTGCGAGGATACGTGTTCGTGTAACGCGTATGCTTTCGAAAACCGTAGGTGCTCGGTTTGG AATGGGGAGGTGTATGACATGTTTCGGCTTGGTAATGGTTCGACGGGTGGTGTGCCGATTTTCGTTAGGGTTGCTGCTGAGGTGGCGAGTGGTGGTTCGG GTTCGAAGAAGGGTGTTGTTATTGGTGCTGTGCTTGGATGTCTGGTTGCTGTTGTTCTTGTCGGATTTGTAATGTTCGTAGCGTTCAGGCGGTATCAAAG GCGAAAGATGGATCGAAATGTCGAGGAGAATTTCAACTTTGCGAATGGTGATGAGGATAACAACACGAAACTTACGTTCTTCAGCTTTAAGAACGTTTTA GCTGCGACTGATAACTTCTCCGAAGCGAACAAGCTTGGAGAAGGCGGTTTCGGACCTGTCTATAAGGGAGTACTACTGCATGATCAAGAAGTGGCTATAA AACGGCTTTCGAAGAAATCGGGGCAAGGGTTAGAGGAGTTCATGAACGAGCTGAGACTCATTGCGAAGTTGCAGCACACTTACCTAGTCAGGCTGTTGGG ATGCTGCGTCGAGAGGGAGGAGAAGATACTGATCTATGAGTATTTACCGAATCGGAGCCTGGACAAGTTCCTGTTTGATCCGGCTGCAAAAACCGATTTG GACTGGCTGATGCGGATCAAGATCATCGAAGGGATAGCTCAGGGACTGCTGTACATCCACAAGTACTCAAGATTGAAGGTCATCCACAGAGACTTGAAGG CCAGCAATGTTCTTTTGGATGCTGATATGAACCCCAAGATCTCGGACTTCGGAATGGCCAGGATCTTCGGGATCGATCAAGCTGAAGCTAATACCGTCCG CATAGTAGGAACATATGGATACATGTCACCAGAATACGCAATCTACGGGTCATTCTCGGAGAAGTCAGACGTGTTCAGCTATGGCGTACTACTTTTGGAG ATCGTGAGCGGGAGGAGGAACACCGATTTTTACGACCGAGAAACTCCGTTCTCCCTTCTTTGCTGGGCATGGGAGCTATGGAAAGAAGGGAAACCGGAAG AGCTGATCGATCCGGCAGTGAAGGATTTGAACATCAATGCTCCACAAGCTGTGAAGTTCGTCCATGTCGGTCTGCTGTGCGTGCAACAAGATCCGGCTGA CAGGCCGACCATGTCCTTAGTAACTCAGATGCTTTCGAGCAATTACTCGCAGTCGTTTCCGTTGCCTGGAGAACCGGCATTCAACATCGGGAGAACTACT GTCGGAGGAAGTAGCAGCGGTGGATCTGTTCCTAACGATATCTCGAATAACCAGATCACAATGACCATGCCAGCTGCTTTCTTGGCGGCCCATCCATGGC TGAACTTTCCAGTCATCATCACCATTTTGTTCATTTCCTTTTCTCTGAAAGCCCATTTCTGTCAGGGAGCTGACAGGATTACAAAGAACCAATCTCTGTC TGTAAACCAAACTCTGGTCTCAGCAGGGAGCAGATTCGAACTCGGTTTCTTCAAGCCCGGCAACTCATCGAACTACTACCTCGGAATCTGCTTCCACAAA GTGAGTAGAGCAGTGTGGGTAGCCAACAGAGAATCGCCGATTTTCAACCATTCCTCTACTGTGTTAAGATTCTCGGACGGGAATCTAGCTCTGTTCAGCG ATGAGTCCGGCCAGGTTCCCATTTGGTCTACTGATTCTTCGGCCCCTTGTACGGAAGCTGTTCTTCAGGATGATGGGAATCTCGTGTTGAAGGGGGGATC ATCTGCTGATGAGATCCTGTGGCAGAGCTTCGACAACCCAACTGATACTTTGCTTCCTGGTGCGAAGCTCGGGCACAACAAAATCACGGGGAGGTACATT ACTATGGTTCCGTGGAAGAGTGAGGAAGATCCAGCTCCAGGTGATTTCACCCTGCAGCTAGATTTGAACGGGACGAATCAGATCGTTGTTATCACGAACA AGTCCACCTTGCATTGGACTAGTGGGCTTTGGAACGGGCGTTTCTTTAGCTCGGTTCCTGAGATGATGTGGAAGAACATTTACGACTTTGTCTACATCGA TAATGAGAACGAGGCCTACTACGCATATTCCTTGCTCAACAAGTCATTCATCTTCCGCAAGTCGGCAAGCCAAGGTGGGAACTTCCAGGCCTATAGATCA CTTAGGAATATTCAAGAGTGCGAATCTACTTACCTCGACAGTTGCTCCTGCAGTGCATATGCTTACCAAGACGATACATGCTCAATTTGGTCGCAAGAAG TTTACGATATCCATAGCCTTGCTGATGACCCTACCGGAGTACCAATTTATGTAAGAGTTGGTACTGGTACTGGACTCCCAAGTTATGGTACTAAGAGAAT GGTTCTTGGTGCTGTGTTTGGCTCAATAGCCGCGGTCGTTTTCATCGGCTTTCTATCGATTGCAGTATCGAGATGGTACCACAGACACAAGCTAGGAAAC AATGATGAGAACAGCTACTTTAACGGGAAAGGAGGCGAAGAAAACCATACGAAGCTGACATTCTTCAGCATCAAGACTGTATTAGCTGCAACAGACAACT TTTCTGAAGCTAAGAAATTAGGAGAGGGCGGTTTCGGCCCAGTCTATAAAGTAGGTTTCAGCCCTGAACTCATTTTCTTTGCTGGAGTTTTGGTTCCTGA TGATCAAGAAGTGGCTGTAAAAAGGCTTTCGAAGAAATCGGAACAGGGGATAGAGGAATTCATGAATGAGCTGAAGCTCATTGCGAAACTCCAACACACT TACCTGGTTAGGCTGCTGGGATGCTGTGTTGAAAAGGAGGAGAAGATACTGATCTACGAGTACTTGCCGAATCGAAGCTTGGACAAATTCCTCTTTGATT CACCTGCAAAAGCAGATTTGGACTGGCTTACGCGAATTAAAATTATAGATGGCATAGCTCAAGGGCTGCTGTACATCCATAAGTACTCGAGACTAAATGT TATTCACAGGGATATGAAGGCAAGCAATGTTCTGTTGGATGCTGAAATGAATCCCAAAATTTCAGATTTCAGAACGGCAAGGAATTTCAGGATTGGCCAA GCAGAAGCTAAAACCAATCGAATAGTTGGAACATACGGCTACATGTCCCCAGAATATGTAATCTATGGGAAGTTCTCGGAGAAATCAGATGTGTTCAGCT ACGGGGTGTTGCTGTTGGAGATTGTGAGCGGAAGGAGGAACAAAGATTTCAATCAATCCGAGACTCCATCCTCCCTTCTTTCCTGGAAGATATGGGAGCT ATGGCAAGAAGGAAAACCAGAAGAGCTAATTGATCCATCAGTGAAGGATACCTGCAGTGAAGTTGATCCACATTGCCCTTTCTATGCGTGCAAGAAGCTC CATCTAACAGGCCAACTATGGCTTCAGTTGCTCAGATGTTATCAAGTAATTATCCAGAGTCATTTCCACTGCCAAAAGAACCGGCCTTTACGACGATCGA GAGCTGTTCTTCCTGATAATTGTTCAAACAATCAGATATCAATGACCTTATCAGTTGGTAGATAG
AA sequence Show only first row Show all	>Lus10018516 pacid=23180439 polypeptide=Lus10018516 locus=Lus10018516.g ID=Lus10018516.BGIv1.0 annot-version=v1.0 MAQLRLNFPTIVVFTCFLLTTTTRLCLGADRISQNETLTVNQTLISSNDRFELGFFNPGNSSSYYLGIWYYQVSIRTVVWVANRESPLSGNSSAELRISS GGGLALFFNQSQIWSTSRMASTSPTEAVLLEDGNFVLRKTDSSEIVWQSFEHPTNIFLPEAKLSRSKITGEHTTVVPWRGNDDPAPGNFSLQLDPNGTDQ FVIIKDASSLYWNSGVWNGRFFTSVPELRTNFSYNFFFIDNENETYFTYSLYNKSSIFHVAITEGGNIQLLSWMEATQRWFLAWSRPKLQCQVQLYCGAF GSCDDESTPTCRCLEGFVPKSNDEYDSNIFYSGCIRRSELQCGRSNNNTDRFIRGYAVRDTVSGSPASRSAANVEECQLVCEDTCSCNAYAFENRRCSVW NGEVYDMFRLGNGSTGGVPIFVRVAAEVASGGSGSKKGVVIGAVLGCLVAVVLVGFVMFVAFRRYQRRKMDRNVEENFNFANGDEDNNTKLTFFSFKNVL AATDNFSEANKLGEGGFGPVYKGVLLHDQEVAIKRLSKKSGQGLEEFMNELRLIAKLQHTYLVRLLGCCVEREEKILIYEYLPNRSLDKFLFDPAAKTDL DWLMRIKIIEGIAQGLLYIHKYSRLKVIHRDLKASNVLLDADMNPKISDFGMARIFGIDQAEANTVRIVGTYGYMSPEYAIYGSFSEKSDVFSYGVLLLE IVSGRRNTDFYDRETPFSLLCWAWELWKEGKPEELIDPAVKDLNINAPQAVKFVHVGLLCVQQDPADRPTMSLVTQMLSSNYSQSFPLPGEPAFNIGRTT VGGSSSGGSVPNDISNNQITMTMPAAFLAAHPWLNFPVIITILFISFSLKAHFCQGADRITKNQSLSVNQTLVSAGSRFELGFFKPGNSSNYYLGICFHK VSRAVWVANRESPIFNHSSTVLRFSDGNLALFSDESGQVPIWSTDSSAPCTEAVLQDDGNLVLKGGSSADEILWQSFDNPTDTLLPGAKLGHNKITGRYI TMVPWKSEEDPAPGDFTLQLDLNGTNQIVVITNKSTLHWTSGLWNGRFFSSVPEMMWKNIYDFVYIDNENEAYYAYSLLNKSFIFRKSASQGGNFQAYRS LRNIQECESTYLDSCSCSAYAYQDDTCSIWSQEVYDIHSLADDPTGVPIYVRVGTGTGLPSYGTKRMVLGAVFGSIAAVVFIGFLSIAVSRWYHRHKLGN NDENSYFNGKGGEENHTKLTFFSIKTVLAATDNFSEAKKLGEGGFGPVYKVGFSPELIFFAGVLVPDDQEVAVKRLSKKSEQGIEEFMNELKLIAKLQHT YLVRLLGCCVEKEEKILIYEYLPNRSLDKFLFDSPAKADLDWLTRIKIIDGIAQGLLYIHKYSRLNVIHRDMKASNVLLDAEMNPKISDFRTARNFRIGQ AEAKTNRIVGTYGYMSPEYVIYGKFSEKSDVFSYGVLLLEIVSGRRNKDFNQSETPSSLLSWKIWELWQEGKPEELIDPSVKDTCSEVDPHCPFYACKKL HLTGQLWLQLLRCYQVIIQSHFHCQKNRPLRRSRAVLPDNCSNNQISMTLSVGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11300			protein serine/threonine kinas...		Lus10018516 [exp]	0	1
AT4G17070			peptidyl-prolyl cis-trans isom...		Lus10037182 [exp]	5.5	0.9156
AT3G29170			Eukaryotic protein of unknown ...		Lus10028939 [exp]	7.2	0.8897
AT5G36930			Disease resistance protein (TI...		Lus10037406 [exp]	9.2	0.8894
AT1G11300			protein serine/threonine kinas...		Lus10039731 [exp]	11.6	0.9219
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10021023 [exp]	11.7	0.9221
AT2G27510		ATFD3	ferredoxin 3 (.1)		Lus10020616 [exp]	12.3	0.9237
AT2G26980		CIPK3, SnRK3.17	SNF1-RELATED PROTEIN KINASE 3....		Lus10022590 [exp]	13.6	0.8761
AT3G11920			glutaredoxin-related (.1)		Lus10012909 [exp]	19.9	0.9171
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10006305 [exp]	20.1	0.8895
					Lus10027730 [exp]	20.6	0.9126

Compare expression of checked genes

Lus10018516 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.