Plant FIBer expression Database

Lus10018519 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039737
[exp]
295 / 1e-102 ND /
Lus10041112
[exp]
42 / 7e-05 ND /
Lus10036438
[exp]
42 / 8e-05 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G141600
[exp]
49 / 4e-07 ND /
Potri.005G204000
[exp]
49 / 5e-07 ND /
Potri.002G058200
[exp]
47 / 3e-06 ND /
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05678 VQ VQ motif
Representative CDS sequence
>Lus10018519 pacid=23180511 polypeptide=Lus10018519 locus=Lus10018519.g ID=Lus10018519.BGIv1.0 annot-version=v1.0
ATGGCTATGGGGAACAATAAGAGGCGAAGATCATCAGTTGGTCAAACCGAGTCCACCATCTCGAAGAAGTCGAAGAACAAGAAGAGCAACAACAGCGGAG
AAAAGGCGGCTACTATTATTAAACGAGAGAAGTGCAGTAGTAGCGACGGAGAAGAGGTCCTTTTGCGACGGCCCAAAGTTTACATAACGGACATCTCGAA
TTTCAAGACTCTTGTCCAGGAGTTAACCGGTAACGGAGCTTTAGGGACAGCCACAGCTATTGTTACCGTCGCTAATGATCCAGTCAACCATACACCTCCT
GTCTCCAGCCAGTCAGAGAGTGACAGCGTGGACACTTTCAGCCCGGCGGCTGACTCGTCAAGTGAGACGGCATCGTTCGGTCCGGATGAGATGATGATGA
TGATCAACAATAGTTTTTTGTATGGCGAGGAGGAGATGGCTTGTAAAACGACGTCGTCTGATGATCATTACGATTTGGCGGCGTGGGATGATCTTGAAGC
TTTGATGCAAGATATGGAGGATCAGGATGATCAGTTTCCGTTATTCGAGTCGAGTAATTTACAAGGAAGTGCCGAAATTCATCATTGTTATGAGGAAGAT
CTGAGCATCTACGACTACGATTTCTCGGGAATCGTGTGCTGA
AA sequence
>Lus10018519 pacid=23180511 polypeptide=Lus10018519 locus=Lus10018519.g ID=Lus10018519.BGIv1.0 annot-version=v1.0
MAMGNNKRRRSSVGQTESTISKKSKNKKSNNSGEKAATIIKREKCSSSDGEEVLLRRPKVYITDISNFKTLVQELTGNGALGTATAIVTVANDPVNHTPP
VSSQSESDSVDTFSPAADSSSETASFGPDEMMMMINNSFLYGEEEMACKTTSSDDHYDLAAWDDLEALMQDMEDQDDQFPLFESSNLQGSAEIHHCYEED
LSIYDYDFSGIVC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10018519
[exp]
0 1
AT4G30380 EXLB2 Barwin-related endoglucanase (... Lus10026931
[exp]
1.7 0.7052
AT1G22640 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMA... Lus10001043
[exp]
5.7 0.7452
AT1G24160 unknown protein Lus10029213
[exp]
8.2 0.7397
AT2G29260 NAD(P)-binding Rossmann-fold s... Lus10016500
[exp]
9.6 0.6047
AT2G29110 ATGLR2.8 glutamate receptor 2.8 (.1) Lus10026877
[exp]
16.7 0.6913
AT5G18460 Protein of Unknown Function (D... Lus10006860
[exp]
18.7 0.6913
Lus10009372
[exp]
20.5 0.6913
Lus10000400
[exp]
22.1 0.6913
AT1G75490 AP2_ERF DREB2D Integrase-type DNA-binding sup... Lus10006127
[exp]
23.1 0.6622
AT4G16295 SPH1 S-protein homologue 1 (.1) Lus10029390
[exp]
23.7 0.6913

Lus10018519 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.