Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03270 162 / 9e-48 CYCD6;1 Cyclin D6;1 (.1) AT1G70210 67 / 2e-12 ATCYCD1;1, CYCD1;1 CYCLIN D1;1 (.1) AT5G65420 60 / 3e-10 CYCD4;1 CYCLIN D4;1 (.1.2.3) AT5G10440 59 / 6e-10 CYCD4;2 cyclin d4;2 (.1) AT3G50070 57 / 3e-09 CYCD3;3 CYCLIN D3;3 (.1) AT2G22490 56 / 2e-08 CYCD2;1, ATCYCD2;1 Cyclin D2;1 (.1.2) AT4G34160 56 / 2e-08 CYCD3;1 CYCLIN D3;1 (.1) AT4G37630 51 / 4e-07 CYCD5;1 cyclin d5;1 (.1.2) AT5G67260 50 / 9e-07 CYCD3;2 CYCLIN D3;2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039738 [exp] 447 / 7e-159 AT4G03270 243 / 1e-78 Cyclin D6;1 (.1) Lus10033736 [exp] 210 / 8e-66 AT4G03270 221 / 5e-70 Cyclin D6;1 (.1) Lus10031608 [exp] 167 / 4e-49 AT4G03270 211 / 4e-66 Cyclin D6;1 (.1) Lus10018411 [exp] 115 / 6e-30 AT4G03270 152 / 4e-44 Cyclin D6;1 (.1) Lus10002587 [exp] 110 / 6e-28 AT4G03270 169 / 8e-51 Cyclin D6;1 (.1) Lus10010709 [exp] 70 / 3e-13 AT1G70210 375 / 4e-130 CYCLIN D1;1 (.1) Lus10029194 [exp] 67 / 3e-12 AT1G70210 367 / 2e-127 CYCLIN D1;1 (.1) Lus10014089 [exp] 64 / 2e-11 AT4G34160 332 / 2e-112 CYCLIN D3;1 (.1) Lus10019825 [exp] 64 / 3e-11 AT4G34160 332 / 4e-112 CYCLIN D3;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G118600 [exp] 218 / 4e-69 AT4G03270 244 / 2e-79 Cyclin D6;1 (.1) Potri.013G149000 [exp] 209 / 7e-66 AT4G03270 231 / 1e-74 Cyclin D6;1 (.1) Potri.011G040900 [exp] 187 / 3e-57 AT4G03270 213 / 1e-67 Cyclin D6;1 (.1) Potri.004G032100 [exp] 176 / 5e-53 AT4G03270 216 / 6e-69 Cyclin D6;1 (.1) Potri.011G040500 [exp] 147 / 2e-42 AT4G03270 178 / 7e-55 Cyclin D6;1 (.1) Potri.002G103500 [exp] 67 / 3e-12 AT2G22490 262 / 3e-85 Cyclin D2;1 (.1.2) Potri.005G157800 [exp] 64 / 3e-11 AT5G65420 228 / 2e-73 CYCLIN D4;1 (.1.2.3) Potri.008G146600 [exp] 62 / 1e-10 AT1G70210 370 / 3e-128 CYCLIN D1;1 (.1) Potri.005G141900 [exp] 61 / 2e-10 AT5G67260 327 / 2e-110 CYCLIN D3;2 (.1) Potri.010G095200 [exp] 61 / 2e-10 AT1G70210 374 / 6e-130 CYCLIN D1;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain CL0065 [flax] [poplar] Cyclin PF02984 [flax] [poplar] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10018520 pacid=23180471 polypeptide=Lus10018520 locus=Lus10018520.g ID=Lus10018520.BGIv1.0 annot-version=v1.0 ATGGAATTCGAGCTGGAAAACCCACTAACCAGCTTCTGCAACCATTACCAAGACGACCATAACTCTTCCATCTTCCTCGTTGAATCTCAACACATGCCTT CCCTTTCTTCCTCCGCCTTCTCCTTCCGTCAGAAAGCCGTTTCTTCCATCTTACAGGCATCGTCAAGATTCGACCCTTTTTTGTCATACCTCGCCGTCAA CTACCTCGACCGGTTCTTATCCACCCGAGAATTCACGCAAGAGAAGCCGTGGGTTTTCAATCTCCTCGCAGTCTCATGCATCTCTCTCGCTGTCAAAATG ACGAATCGAACAACTTCAGATCTCTCCCTCAACGACATTCAGGCCCCTCTGCCATTGAAGCAGGCGCTGAGAGCTCGCGCTGTTGAAATCATCCTCAAAG CTCAGAATGAGGTGAAGCTGGTAGGGTTCAAGCCATCAGTGATCGCAGCGTCGGGGCTTCTGAGTTCCTGCCATGAGCTATTCCCGTTACAGTTTTCGTG CTTCAGAGATTCAATCCTTAGCTGTTCATATGTAAATAAGGAAATGGTGGGGGAGTGCTACAAGGAGATGCAAGAGATGGCAAAGGAAGAGTACGAGTCA GTGATGGACAGGGTGTCGAGCTCCTACTCCGATACGGCGGTCAACGTGCTTGACCGGAAGGTCCTGAGCTCATCGTCGTGGTCAGAGAGTGAAGCAGAGG AGGACGATGCGGAGGAGGAAGAAGTAAAGAAAGGGACCATTGCCGTCTCCGGCTCGGGCAGTTGCAGTTTCAACAGAAGTACTAGTGCCAACGTTACTAG TACCAATACTACTGGGGAAGTGGTACAAAGACCAGACCAAACGGATCAAGAGGAGGAGATCATGGTGATGATGATCAACGGCAGCAATGATAAGAGGAGG AAGATCAACTCTGATTACTACTGTAACTAA
AA sequence Show only first row Show all	>Lus10018520 pacid=23180471 polypeptide=Lus10018520 locus=Lus10018520.g ID=Lus10018520.BGIv1.0 annot-version=v1.0 MEFELENPLTSFCNHYQDDHNSSIFLVESQHMPSLSSSAFSFRQKAVSSILQASSRFDPFLSYLAVNYLDRFLSTREFTQEKPWVFNLLAVSCISLAVKM TNRTTSDLSLNDIQAPLPLKQALRARAVEIILKAQNEVKLVGFKPSVIAASGLLSSCHELFPLQFSCFRDSILSCSYVNKEMVGECYKEMQEMAKEEYES VMDRVSSSYSDTAVNVLDRKVLSSSSWSESEAEEDDAEEEEVKKGTIAVSGSGSCSFNRSTSANVTSTNTTGEVVQRPDQTDQEEEIMVMMINGSNDKRR KINSDYYCN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10018520 [exp]	0	1
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10036496 [exp]	1.0	0.9813
AT5G51560			Leucine-rich repeat protein ki...		Lus10031702 [exp]	2.2	0.9614
AT2G26580	YABBY	YAB5	YABBY5, plant-specific transcr...		Lus10030105 [exp]	2.4	0.9609
AT3G05470			Actin-binding FH2 (formin homo...		Lus10004505 [exp]	2.4	0.9711
AT5G41070		DRB5	dsRNA-binding protein 5 (.1)		Lus10032007 [exp]	2.8	0.9540
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Lus10031108 [exp]	2.8	0.9718
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Lus10031689 [exp]	3.5	0.9621
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10031390 [exp]	7.9	0.9573
AT1G02065	SBP	SPL8	squamosa promoter binding prot...		Lus10028181 [exp]	8.4	0.9468
AT2G28470		BGAL8	beta-galactosidase 8 (.1.2)		Lus10006733 [exp]	8.5	0.9494

Compare expression of checked genes

Lus10018520 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.