Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20340 569 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G28680 520 / 0 TYRDC, TYRDC1 L-TYROSINE DECARBOXYLASE 1, L-tyrosine decarboxylase (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039740 [exp] 991 / 0 AT2G20340 568 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10022856 [exp] 587 / 0 AT2G20340 794 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10024966 [exp] 513 / 2e-179 AT2G20340 706 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10012601 [exp] 108 / 6e-28 AT2G20340 100 / 1e-25 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G052800 [exp] 597 / 0 AT2G20340 553 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.013G052900 [exp] 596 / 0 AT2G20340 555 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.016G114300 [exp] 593 / 0 AT2G20340 552 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.002G255600 [exp] 588 / 0 AT2G20340 753 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.004G036200 [exp] 570 / 0 AT2G20340 596 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00282 [flax] [poplar] Pyridoxal_deC Pyridoxal-dependent decarboxylase conserved domain
Representative CDS sequence Show only first row Show all	>Lus10018522 pacid=23180394 polypeptide=Lus10018522 locus=Lus10018522.g ID=Lus10018522.BGIv1.0 annot-version=v1.0 ATGGGAAGCTTAGATTCAAACATCCCGACAGAAGAACTCGACGCCACCACCACTGAATTCAACCCTTTAAAACCAGAAGAGTTCCGGAGACAAGCACACC AAATGGTTGACTTCATCGCAGATTACTACGGCAAAATCGAGTCCTACCCTGTTCTTTCCCAGGTTCAACCAGGGTACCTCCACTCTCAGCTCCCGGAATC TCCGCCGTACCGGCCGGAATCGATGGAGTCGATCATGAAGGATGTTCAGAGCCAGATTATACCAGGAATGACCCACTGGCTTAGCCCTAACTTCTTTGGG TTTTTTCCTGCAACGGTTAGCACCTCTGCTTTTCTGGGAGAAATGCTCTGCACTTGCTTCAACTCTGTTGGGTTCAATTGGCTTGCTTCCCCTGCATCGA CTGAGCTTGAGATGGTTGTTATGGATTGGCTTGCTGTTGCGCTTAAGCTCCCTTCTTCATTCATGTTTTCAGGGACAGGTGGCGGGGTGATCCACAACAC CACCAGCGAAGCTGTTCTCGTCACTCTCGTTGCGGCAAGAGATCGAGCACTTGGTGTGCACGGCGACGGCGGAAACGATTCCAACCGCCTCTCGAAGCTC TCCGTCTACGCCTCCGATCAGACTCATTCCACATTCTCCAAGGCCTGTAAGATCGCCGGGATAAACCCGGCGAACATCCGGTCTATACCCACTTTGATTT CCAACGGGTTCGCTCTCTCGCCGGAGATTCTCCGGCGAGCGGTGGAGGACGATGTTGCGGCGGGGTTGATCCCGCTTTATCTGTGTGCTACTATAGGGAC CACGTCGACCACAGCCGTTGACCCGATCGGTGCTCTGGCTGACGTGGCGCGGGATTACGCGGTGTGGGTCCACGTGGACTGCGCTTACGGCGGGAGCGCG TGTATATGCCCCGAGTTTAGGCACTACTTGAACGGGGTCGACCGGGTTGACTCGTTGAGTCTCAGCCCGCACAAGTGGCTGCTCAGTTACCTGGATTGTT GCTGTTTATGGGTCAAGGAACCAAGCCGGTTGGTTCGGTCTCTGAGTACCAACCCAGAGTATTTGAAGAACAAACCGAGCGAGTCGAGCTCAGTGGTCGA CTTCAAGGACTGGCAGGTGGGTACCGGACGCAGGTTCAAGTCGCTGAGGCTCTGGCTCGTGATGAGGAGCTACGGTATGGCGAACCTGCAGAGCCACATC CGGTCGGATGTCAGGCTGGCGAAAACGTTCGAGAGGCTTGTCCGGTCCGACCAGAGGTTTGAGGTTGTTGTACCGAGACTGTTTGCATTGGTTTGTTTCC GGTTCGTTCCGAGACAGAGGAACGGCGGGTCGGTCACGGACTGGGTCGAGGTGGCGAACCGGAAGCTGTTGGATTGGGTCAACAGTACGGGTCGGGTATA CATGACACATACGGCGGTGGGAGGAGAGTACATGTTGAGGTTCGCCGTGGGAGCTACGCTGACGGAGGAATGTCACGTGTGTGCCGCGTGGAAGCTCATA AAGGAAGGAGCTGATGGATTGGAGAAGAGCTTGAGTTTCTAG
AA sequence Show only first row Show all	>Lus10018522 pacid=23180394 polypeptide=Lus10018522 locus=Lus10018522.g ID=Lus10018522.BGIv1.0 annot-version=v1.0 MGSLDSNIPTEELDATTTEFNPLKPEEFRRQAHQMVDFIADYYGKIESYPVLSQVQPGYLHSQLPESPPYRPESMESIMKDVQSQIIPGMTHWLSPNFFG FFPATVSTSAFLGEMLCTCFNSVGFNWLASPASTELEMVVMDWLAVALKLPSSFMFSGTGGGVIHNTTSEAVLVTLVAARDRALGVHGDGGNDSNRLSKL SVYASDQTHSTFSKACKIAGINPANIRSIPTLISNGFALSPEILRRAVEDDVAAGLIPLYLCATIGTTSTTAVDPIGALADVARDYAVWVHVDCAYGGSA CICPEFRHYLNGVDRVDSLSLSPHKWLLSYLDCCCLWVKEPSRLVRSLSTNPEYLKNKPSESSSVVDFKDWQVGTGRRFKSLRLWLVMRSYGMANLQSHI RSDVRLAKTFERLVRSDQRFEVVVPRLFALVCFRFVPRQRNGGSVTDWVEVANRKLLDWVNSTGRVYMTHTAVGGEYMLRFAVGATLTEECHVCAAWKLI KEGADGLEKSLSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10018522 [exp]	0	1
AT1G37140		MCT1	MEI2 C-terminal RRM only like ...		Lus10018195 [exp]	4.0	0.9604
					Lus10032831 [exp]	9.0	0.8167
AT5G15800	MADS	AGL2, SEP1	SEPALLATA1, AGAMOUS-like 2, K-...		Lus10034663 [exp]	10.4	0.9502
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Lus10005080 [exp]	12.7	0.9495
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10004637 [exp]	14.7	0.9471
					Lus10006666 [exp]	15.9	0.8078
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10015765 [exp]	16.6	0.9469
AT3G05950			RmlC-like cupins superfamily p...		Lus10026962 [exp]	17.2	0.7643
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10026679 [exp]	18.2	0.9467
AT5G37660		PDLP7	plasmodesmata-located protein ...		Lus10015952 [exp]	19.6	0.9466

Compare expression of checked genes

Lus10018522 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.