Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05120 521 / 0 FUR1, ENT3, FLUOROURIDINEINSENSITIVE1, ATENT3 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) AT4G05130 500 / 6e-177 ATENT4 equilibrative nucleoside transporter 4 (.1) AT4G05140 498 / 2e-176 Nucleoside transporter family protein (.1) AT4G05110 492 / 8e-174 ATENT6 equilibrative nucleoside transporter 6 (.1) AT3G09990 461 / 1e-161 Nucleoside transporter family protein (.1) AT1G61630 448 / 1e-156 ATENT7 equilibrative nucleoside transporter 7 (.1) AT1G70330 159 / 4e-44 "ENT1,AT", ENT1,AT, ATENT1 equilibrative nucleotide transporter 1 (.1) AT1G02630 146 / 8e-40 Nucleoside transporter family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039741 [exp] 764 / 0 AT4G05120 580 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10002589 [exp] 509 / 2e-180 AT4G05120 609 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10018413 [exp] 504 / 1e-177 AT4G05120 606 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10018414 [exp] 460 / 6e-160 AT4G05120 548 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10020079 [exp] 343 / 1e-115 AT4G05120 392 / 7e-135 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10030104 [exp] 142 / 3e-38 AT1G02630 526 / 0.0 Nucleoside transporter family protein (.1.2) Lus10029162 [exp] 143 / 4e-38 AT1G70330 551 / 0.0 equilibrative nucleotide transporter 1 (.1) Lus10013002 [exp] 136 / 9e-36 AT1G70330 534 / 0.0 equilibrative nucleotide transporter 1 (.1) Lus10002590 [exp] 97 / 1e-24 AT4G05130 97 / 2e-25 equilibrative nucleoside transporter 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G118400 [exp] 580 / 0 AT4G05120 520 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.004G032400 [exp] 529 / 0 AT4G05120 584 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.004G032300 [exp] 514 / 0 AT4G05120 586 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.011G041112 [exp] 474 / 2e-166 AT4G05120 540 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.004G032500 [exp] 466 / 2e-163 AT4G05120 457 / 2e-160 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.012G058900 [exp] 148 / 4e-40 AT1G70330 530 / 0.0 equilibrative nucleotide transporter 1 (.1) Potri.006G068100 [exp] 134 / 3e-35 AT1G02630 432 / 6e-151 Nucleoside transporter family protein (.1.2) Potri.018G130000 [exp] 130 / 8e-34 AT1G02630 452 / 5e-159 Nucleoside transporter family protein (.1.2) Potri.018G130200 [exp] 76 / 4e-16 AT1G02630 212 / 5e-68 Nucleoside transporter family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF01733 [flax] [poplar] Nucleoside_tran Nucleoside transporter
Representative CDS sequence Show only first row Show all	>Lus10018523 pacid=23180493 polypeptide=Lus10018523 locus=Lus10018523.g ID=Lus10018523.BGIv1.0 annot-version=v1.0 ATGGAACCTAACGATGGCAATGCAGCTAATCCCAACATGGAGGGGAAATACGCTGCTGTGATCGTGTGTTGGATACTCGGAAACGGATGCCTCTTCTCAT GGAACAGTATGCTCACAATACAAGATTACTACGTTCACCTCTTCCCGGACTATCACCCGTCTCGAGTCCTGACTCTCGTGTACCAGCCCTGCGCGGTTGT AACGATCGCGATTCTTGCATACAGAGAAGCTAAAATCAATACCAGAAACAGAAATTTGCTTGGTTATGCACTTTTCTTCATCAGCTCTCTTGCTGTTCTT GTTTTGGATATAGCAACATCAGGAAGAGGTGGAATTGGAACATTCATAGGAATTTGTATAATCAGCGGATTATTCGGAGTTGCAGATGCTCATGTACAAG GTGGTATGGTTGGAGATCTCTCCCTTATGCATCCTATCTTCATCCAGTCGTTCCTCGCGGGACTAGCAGCATCAGGAGCTCTAACATCAGCACTGAGGCT GATCACTAGAGCAGCATTCGAGAACACTAAGAACGGTCTTCGAAAGGGAGCACTTCTTTTCTTCGGAATCTCCTCGTTTTTCGAGCTTGTGTGCCTCGTT CTGTACGCATTTGCGTTCCCCAAGCTGCCCGTGGTGAAGTTCTATCGCGCTAAGGCTGCCACCGAAGGGTCCAAGACTGTTGCTTCCGATCTTGCTGCTG GTGGACTCCAAACCTTACCTGACCAAGAGGCAGTTGAGCAAGCAAAAAACGTGACGAGGTTCAGCAACAGAGAGCTGTTGATGCAGAATGCTGACTATGT GATCGACATCTACTTGATATACGCTTTGACATTGTCGATTTTCCCCGGTTTCTTGTCTGAAGACACTGGATCACACGGCTTAGGAACATGGTATGCTCTT GTTCTGATTGCAATGTACAATGTCTGGGACCTGATCGGAAGGTACATCCCGCTGGCGAACTTCGCGAAGTTGGAGTCCCGTAAGGGTCTCACCGGAGCTG TTCTATCGCGGTTCTTGCTAATCCCGGCATTCTACTTCACTGCCAAGTATGGAGACCAAGGATGGATGATTTTCCTGACATCAGTCCTAGGATTGACCAA TGGTTACCTAACTGTATGTGTCCTTACAGCTGCACCAAAAGGCTACAAGGGTCCGGAGCAGAATGCGTTGGGGAATTTGCTGGTGGCGTTCCTACTAGCA GGCATATTCTCAGGGGTTACTCTGGACTGGTTGTGGCTCATAGGGAAAGGATGGTGA
AA sequence Show only first row Show all	>Lus10018523 pacid=23180493 polypeptide=Lus10018523 locus=Lus10018523.g ID=Lus10018523.BGIv1.0 annot-version=v1.0 MEPNDGNAANPNMEGKYAAVIVCWILGNGCLFSWNSMLTIQDYYVHLFPDYHPSRVLTLVYQPCAVVTIAILAYREAKINTRNRNLLGYALFFISSLAVL VLDIATSGRGGIGTFIGICIISGLFGVADAHVQGGMVGDLSLMHPIFIQSFLAGLAASGALTSALRLITRAAFENTKNGLRKGALLFFGISSFFELVCLV LYAFAFPKLPVVKFYRAKAATEGSKTVASDLAAGGLQTLPDQEAVEQAKNVTRFSNRELLMQNADYVIDIYLIYALTLSIFPGFLSEDTGSHGLGTWYAL VLIAMYNVWDLIGRYIPLANFAKLESRKGLTGAVLSRFLLIPAFYFTAKYGDQGWMIFLTSVLGLTNGYLTVCVLTAAPKGYKGPEQNALGNLLVAFLLA GIFSGVTLDWLWLIGKGW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10018523 [exp]	0	1
					Lus10031019 [exp]	5.7	0.7860
					Lus10033730 [exp]	6.9	0.7882
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10000546 [exp]	7.1	0.8028
AT1G63060			unknown protein		Lus10001796 [exp]	7.2	0.7846
AT3G22060			Receptor-like protein kinase-r...		Lus10022286 [exp]	7.5	0.7663
AT1G63060			unknown protein		Lus10002567 [exp]	8.1	0.7846
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10012691 [exp]	9.8	0.7492
AT5G01260			Carbohydrate-binding-like fold...		Lus10018226 [exp]	10.1	0.6879
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10001886 [exp]	10.6	0.7614
AT4G15250	CO	COL11	B-box type zinc finger protein...		Lus10039695 [exp]	13.1	0.7552

Compare expression of checked genes

Lus10018523 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.