Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28100 382 / 7e-134 unknown protein AT3G18050 193 / 2e-59 unknown protein AT3G19300 42 / 0.0005 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039742 [exp] 556 / 0 AT4G28100 399 / 2e-140 unknown protein Lus10027253 [exp] 202 / 1e-62 AT3G18050 306 / 2e-103 unknown protein Lus10038961 [exp] 197 / 8e-61 AT3G18050 308 / 6e-104 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G118300 [exp] 414 / 3e-146 AT4G28100 408 / 5e-144 unknown protein Potri.013G148700 [exp] 413 / 6e-146 AT4G28100 377 / 8e-132 unknown protein Potri.015G040900 [exp] 200 / 7e-62 AT3G18050 347 / 2e-119 unknown protein Potri.012G049000 [exp] 186 / 1e-56 AT3G18050 352 / 2e-121 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018524 pacid=23180361 polypeptide=Lus10018524 locus=Lus10018524.g ID=Lus10018524.BGIv1.0 annot-version=v1.0 ATGGCTTCGAAATTGCTCTGTTTCATCTTACTCTGTTTCTCCTCCTCCATCTCTCAAGCTCAAGCTGGGTTCTTAGCCGAACCGGTTCCTAAATCCTACC CGAACACCGTACCGGCCTTCCCCCTCCAGACCGAGTCCCAAATCTGCCGCCTTGACCTCTCCGCCGAGCTCTTCGGCGGCGTCAACGACGCCTGCGGCCG GAACCTCGACCGGAGCCGCTGTTGTCCAGTACTCGCCGCCTGGCTCTTCGCTGCTCACGCGAAATACGCCCTCCAAGTCCCTGCTCCAACCAACTCCTCA TCCTCCCCCGACGCCGCCTCCGACGACGACCAGCTTCCGATGATGCCGGACGACTCCCAGAAGTGCGTGAACTCGCTCCAGACCGCTTTAGTAAGTAAGC ACATCAACATTCCCCAACCCAACGCCAGCTGCGACCCTATACTATGCTTCTGTGGGATCCGACTACACCAGATCACCTCCCTTAGCTGCCCCGCCGCTTT CAACGTCTCCTCCGGCTCCCACAACGCCACTCCGACCGCCACCGTGAAAAATCTCGAGAAGAATTGTAGAAATTCCTCGTACTCCGGATGTACTAAATGC CTCGGCGCTCTCCAAAAGCTCAAGTCCACCGGAAACAAGACTCAATCCCCTGCTTCCGGCGAGGACAGGGCGAAGAAGATGTTCAACAGGGACTGCCAGC TGATGGGGCTGACGTGGCTACTGGCGAGGAACAAGACGGAGTACATCCCCACCGTATCAGCGGTGCTGAGGGCGGTTATGTACAGTGCTCACCCGCACGA GTCCAAATGTAGCCCCGACCAGGAGAACATGCCGTTGGCTGTTGACTCTCTGCAGTTCGAGCGGTCTACTTCTTCGGCGGCGGAGAAGGGCGGCTGGTCT TTGGGGTCGACGTCGGTGATTGTGATGGTTTTGTTTGCTGTAGGGCGACGGTGGTGA
AA sequence Show only first row Show all	>Lus10018524 pacid=23180361 polypeptide=Lus10018524 locus=Lus10018524.g ID=Lus10018524.BGIv1.0 annot-version=v1.0 MASKLLCFILLCFSSSISQAQAGFLAEPVPKSYPNTVPAFPLQTESQICRLDLSAELFGGVNDACGRNLDRSRCCPVLAAWLFAAHAKYALQVPAPTNSS SSPDAASDDDQLPMMPDDSQKCVNSLQTALVSKHINIPQPNASCDPILCFCGIRLHQITSLSCPAAFNVSSGSHNATPTATVKNLEKNCRNSSYSGCTKC LGALQKLKSTGNKTQSPASGEDRAKKMFNRDCQLMGLTWLLARNKTEYIPTVSAVLRAVMYSAHPHESKCSPDQENMPLAVDSLQFERSTSSAAEKGGWS LGSTSVIVMVLFAVGRRW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28100			unknown protein		Lus10018524 [exp]	0	1
AT5G27690			Heavy metal transport/detoxifi...		Lus10031495 [exp]	2.4	0.8904
AT2G14660			unknown protein		Lus10033766 [exp]	2.6	0.8938
AT1G69560	MYB	LOF2, ATMYB105	LATERAL ORGAN FUSION 2, myb do...		Lus10026611 [exp]	2.8	0.8923
AT5G27230			Frigida-like protein (.1)		Lus10033828 [exp]	3.5	0.8544
AT3G06270			Protein phosphatase 2C family ...		Lus10021952 [exp]	4.0	0.8614
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Lus10022409 [exp]	4.2	0.8572
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10030989 [exp]	5.3	0.8617
AT5G27690			Heavy metal transport/detoxifi...		Lus10015174 [exp]	6.0	0.8391
AT3G10430			F-box and associated interacti...		Lus10007847 [exp]	6.9	0.8068
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10019214 [exp]	7.3	0.8665

Compare expression of checked genes

Lus10018524 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.