Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35160 159 / 3e-45 O-methyltransferase family protein (.1) AT4G35150 133 / 7e-36 O-methyltransferase family protein (.1) AT1G51990 123 / 4e-32 O-methyltransferase family protein (.1.2) AT5G54160 115 / 7e-29 ATOMT1 O-methyltransferase 1 (.1) AT5G53810 103 / 1e-24 O-methyltransferase family protein (.1) AT1G33030 101 / 4e-24 O-methyltransferase family protein (.1) AT1G77520 100 / 1e-23 O-methyltransferase family protein (.1) AT1G77530 91 / 5e-20 O-methyltransferase family protein (.1) AT5G37170 82 / 2e-17 O-methyltransferase family protein (.1) AT3G53140 81 / 1e-16 O-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039744 [exp] 622 / 0 AT4G35160 190 / 5e-57 O-methyltransferase family protein (.1) Lus10033653 [exp] 285 / 5e-94 AT4G35150 172 / 2e-50 O-methyltransferase family protein (.1) Lus10008538 [exp] 271 / 1e-88 AT4G35160 167 / 5e-48 O-methyltransferase family protein (.1) Lus10033655 [exp] 268 / 1e-87 AT4G35150 193 / 3e-58 O-methyltransferase family protein (.1) Lus10033656 [exp] 268 / 3e-87 AT4G35150 211 / 8e-65 O-methyltransferase family protein (.1) Lus10017691 [exp] 261 / 1e-84 AT4G35160 194 / 2e-58 O-methyltransferase family protein (.1) Lus10017699 [exp] 256 / 7e-83 AT4G35150 204 / 2e-62 O-methyltransferase family protein (.1) Lus10018629 [exp] 252 / 4e-81 AT4G35160 214 / 3e-66 O-methyltransferase family protein (.1) Lus10015311 [exp] 243 / 1e-77 AT4G35160 189 / 1e-56 O-methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G093000 [exp] 276 / 2e-90 AT4G35160 230 / 1e-72 O-methyltransferase family protein (.1) Potri.019G093100 [exp] 272 / 3e-89 AT4G35160 225 / 1e-70 O-methyltransferase family protein (.1) Potri.013G121300 [exp] 269 / 5e-88 AT4G35160 201 / 4e-61 O-methyltransferase family protein (.1) Potri.013G121400 [exp] 266 / 7e-87 AT4G35160 202 / 8e-62 O-methyltransferase family protein (.1) Potri.013G122400 [exp] 265 / 3e-86 AT4G35160 188 / 2e-56 O-methyltransferase family protein (.1) Potri.013G120800 [exp] 264 / 4e-86 AT4G35160 205 / 7e-63 O-methyltransferase family protein (.1) Potri.011G059600 [exp] 264 / 7e-86 AT4G35160 196 / 3e-59 O-methyltransferase family protein (.1) Potri.013G121900 [exp] 257 / 2e-83 AT4G35160 184 / 5e-55 O-methyltransferase family protein (.1) Potri.004G050500 [exp] 256 / 4e-83 AT4G35160 178 / 2e-52 O-methyltransferase family protein (.1) Potri.011G059500 [exp] 248 / 8e-80 AT4G35160 177 / 6e-52 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00891 [flax] [poplar] Methyltransf_2 O-methyltransferase domain CL0123 [flax] [poplar] HTH PF08100 [flax] [poplar] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10018526 pacid=23180494 polypeptide=Lus10018526 locus=Lus10018526.g ID=Lus10018526.BGIv1.0 annot-version=v1.0 ATGGATCTTGAAGCGCAATCTCACATCTTCTACCATTCCTTCAGCTACATAGTCTCGATGTCGATGAAATGCGCGGTCGAGCTCGGGATACCGGACCTCA TCCACCGCCGATCTCCCTCGCCCACTTCGCTGTCCACTCTCGTCTCGGCCCTCGAGCTGGACATGTCGAAATACGAGGCCGTTAGACGCCTCATGCGCCT CCTCGTCCACGCTGGCTTCTTCCAAATACAACAAGGAGAAGAAGAAGGAGGTAACGAGGAATGTAATTACCTTCCTACCCCTTCGACGAAGCTCCTCATC ACCTCTCATTTGTTGTTGAACCTAGACCCGAAGATACTCGCCACGTGGACGTTGTTCAGTGGCTGGTTCCGGGAAGGAGGCGGTAAGAGTGATGTGCCGC TTTTCCAGGCGGTGAGTGGTTTGCCGGCGTGGGAGTACTTGGCTGAGAATCCGGAGCTTAAGAAGAAGTTCTACCTCGCCACCGATCAGGACTCCAGATT GATAGCGGAAGGGTTGGTTACAAGGTGCAAGGAGGTGTTCGACGGAGTGGAGACTTTGGTGGATGTTGGCGGAGGTAACGGCATCATGGCCGTCACCATT GCTAAGGCATTGCCAAAGATCGAATGCACCGTACTCGATCTGCCTCACGTCGTCGTTAACTCGAAAGAGGGCGACGGCGTTAACAACGTGAAGTATGTCG GCGGGAGCATGTTCGAAAAAGTCCCGCCAGCCGATGCTGTTCTCCTTAAGTCAGTTCTGCACAACTGGAATGATGAGAAAAGCGTGGAGCTGTTGAAGAT ATGCAGAGAGGCGGTTTGCGGCCGAGAAGGGGAGACGAAGAAGACGAAGAAAGGGAAGGTGATACTCGTCGATATGGTGGTCGAAAACGAGCAAGGTGGG ACGGTGGATGACAAAGAGTTGACTCAAGTGAAGCTCTGCTTCGACTTGCTGATGATGAGTTATTGCAACGGCAAGGAGAGGACTGAGAATGAATGGAAGA ACTTGTTCATGTTGGCTGGTTTTAGTGACTACAAGATTGTTCAATCTTTGGGTACGTTGACGGTCGTTGAAGTCTATCCTTAA
AA sequence Show only first row Show all	>Lus10018526 pacid=23180494 polypeptide=Lus10018526 locus=Lus10018526.g ID=Lus10018526.BGIv1.0 annot-version=v1.0 MDLEAQSHIFYHSFSYIVSMSMKCAVELGIPDLIHRRSPSPTSLSTLVSALELDMSKYEAVRRLMRLLVHAGFFQIQQGEEEGGNEECNYLPTPSTKLLI TSHLLLNLDPKILATWTLFSGWFREGGGKSDVPLFQAVSGLPAWEYLAENPELKKKFYLATDQDSRLIAEGLVTRCKEVFDGVETLVDVGGGNGIMAVTI AKALPKIECTVLDLPHVVVNSKEGDGVNNVKYVGGSMFEKVPPADAVLLKSVLHNWNDEKSVELLKICREAVCGREGETKKTKKGKVILVDMVVENEQGG TVDDKELTQVKLCFDLLMMSYCNGKERTENEWKNLFMLAGFSDYKIVQSLGTLTVVEVYP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35160			O-methyltransferase family pro...		Lus10018526 [exp]	0	1
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Lus10022646 [exp]	3.2	0.8870
AT1G27220			paired amphipathic helix repea...		Lus10000805 [exp]	6.5	0.7695
AT5G36930			Disease resistance protein (TI...		Lus10007830 [exp]	7.5	0.6570
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10021338 [exp]	7.9	0.7695
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10030286 [exp]	9.2	0.7695
					Lus10033096 [exp]	10.2	0.7695
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10010229 [exp]	11.2	0.7617
AT1G31450			Eukaryotic aspartyl protease f...		Lus10002630 [exp]	12.7	0.7502
AT3G44150			unknown protein		Lus10021005 [exp]	13.0	0.7497
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10004438 [exp]	13.7	0.7494

Compare expression of checked genes

Lus10018526 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.