Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20890 336 / 5e-116 PSB29, THF1 THYLAKOID FORMATION1, photosystem II reaction center PSB29 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039748 [exp] 481 / 2e-173 AT2G20890 364 / 5e-127 THYLAKOID FORMATION1, photosystem II reaction center PSB29 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G117900 [exp] 379 / 3e-133 AT2G20890 397 / 4e-140 THYLAKOID FORMATION1, photosystem II reaction center PSB29 protein (.1) Potri.013G148400 [exp] 377 / 2e-132 AT2G20890 416 / 1e-147 THYLAKOID FORMATION1, photosystem II reaction center PSB29 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11264 [flax] [poplar] ThylakoidFormat Thylakoid formation protein
Representative CDS sequence Show only first row Show all	>Lus10018528 pacid=23180367 polypeptide=Lus10018528 locus=Lus10018528.g ID=Lus10018528.BGIv1.0 annot-version=v1.0 ATGGCGGCACTCACTTCGGTCTCCTTCTCGCCGGCGATTGGTCACTCCGCCGCCGAAGCCAGGTCCTCCTCCTTTATCCGCTCGTTAGCTTTCTCCACCT GCGAAGCCTTCCGTTTCCGAGTTTCCGCCTCCGCTCGCCTCCGTAGCTCTAGCTCCTCCGCCATCGTCGTCCGCTGCATGTCCACCTCTGCAGATTTACC AACAGTGGCAGAGACGAAGCTGAATTTCCTCAAAGCGTATAAGAAACCAATCCCTAGCATCTACAACAACGTGCTCCAGGAGCTGATCGTGCAGCAGCAT TTGATAAAGTACAAGAAGACGTACTCTTACGACTCCGTGTTTGCACTCGGGTTCGTGACCGTCTACGATAAGCTCATGGAAGGATACCCGGTCGATGAGG ATCGGGAGATCATCTTCCAAGCTTATATTAGGGCCTTGCAAGAGGAACCTGAGCAATACAGAAATGATGCTAACAAGCTCGAGGAATGGGCGAGGGGTCA AAACGCTGCTTCGTTGGTTGAGTTTCCATCAAGAGACGGTGAAGTTGAGGGCATATTGAAAGCTATTGCGGAAAGAGCTGCGGCTGGCAAATTCAGCTAC AGCCGTTTCTTTGCCGTTGGGCTCTTCCGCCTTCTCGAGCTTTCGAACGCTACAGAACCCACTGTGTTGGAAAAGTTATGCGCAGCGCTAAATGTGGACA AAAGGAGCGTGGATCGAGATCTTGATGTGTACCGCAATCTACTCTCGAAGCTAGTCCAGGCAAAGGAGTTGCTGAAGGAGTATGTTGCAAGGGAGAAGAA GAAGCGCGAGGAACGATCAGCAGAATCGCAGAAGGCCAGCGAAGCAGTCAAGAACTGCTTGGCGCAGCCTAACTACGTAGGCCAGTAG
AA sequence Show only first row Show all	>Lus10018528 pacid=23180367 polypeptide=Lus10018528 locus=Lus10018528.g ID=Lus10018528.BGIv1.0 annot-version=v1.0 MAALTSVSFSPAIGHSAAEARSSSFIRSLAFSTCEAFRFRVSASARLRSSSSSAIVVRCMSTSADLPTVAETKLNFLKAYKKPIPSIYNNVLQELIVQQH LIKYKKTYSYDSVFALGFVTVYDKLMEGYPVDEDREIIFQAYIRALQEEPEQYRNDANKLEEWARGQNAASLVEFPSRDGEVEGILKAIAERAAAGKFSY SRFFAVGLFRLLELSNATEPTVLEKLCAALNVDKRSVDRDLDVYRNLLSKLVQAKELLKEYVAREKKKREERSAESQKASEAVKNCLAQPNYVGQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20890		PSB29, THF1	THYLAKOID FORMATION1, photosys...		Lus10018528 [exp]	0	1
AT2G20890		PSB29, THF1	THYLAKOID FORMATION1, photosys...		Lus10039748 [exp]	1.0	0.9634
AT4G10340		LHCB5	light harvesting complex of ph...		Lus10013778 [exp]	2.0	0.9402
AT1G26220			Acyl-CoA N-acyltransferases (N...		Lus10013061 [exp]	3.7	0.9286
AT3G06510		SFR2, ATSFR2	SENSITIVE TO FREEZING 2, Glyco...		Lus10011147 [exp]	3.9	0.9338
AT4G27600		NARA5	GENES NECESSARY FOR THE ACHIE...		Lus10026867 [exp]	4.6	0.9385
AT4G10340		LHCB5	light harvesting complex of ph...		Lus10039156 [exp]	4.9	0.9342
AT1G45474		LHCA5	photosystem I light harvesting...		Lus10021730 [exp]	4.9	0.9314
AT2G18710		SCY1	SECY homolog 1 (.1)		Lus10023202 [exp]	7.5	0.9283
AT3G59400		GUN4	GENOMES UNCOUPLED 4, enzyme bi...		Lus10033819 [exp]	7.9	0.9257
AT4G01050		TROL	thylakoid rhodanese-like (.1)		Lus10029448 [exp]	8.5	0.9165

Compare expression of checked genes

Lus10018528 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.