Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21450 300 / 3e-102 PapD-like superfamily protein (.1.2.3) AT5G54110 271 / 2e-91 ATMAMI membrane-associated mannitol-induced (.1) AT4G05060 248 / 9e-82 PapD-like superfamily protein (.1) AT4G00170 50 / 6e-07 Plant VAMP (vesicle-associated membrane protein) family protein (.1) AT3G60600 46 / 1e-05 (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, VAP27-1, VAP27, (AT)VAP, (AT)VAP, (A VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) AT1G08820 46 / 1e-05 VAP27-2 vamp/synaptobrevin-associated protein 27-2 (.1.2) AT2G45140 45 / 2e-05 PVA12 plant VAP homolog 12 (.1) AT5G47180 44 / 4e-05 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039757 [exp] 387 / 7e-137 AT4G21450 316 / 1e-108 PapD-like superfamily protein (.1.2.3) Lus10002595 [exp] 307 / 3e-105 AT4G21450 389 / 4e-137 PapD-like superfamily protein (.1.2.3) Lus10018420 [exp] 305 / 3e-104 AT4G21450 383 / 6e-135 PapD-like superfamily protein (.1.2.3) Lus10037873 [exp] 265 / 8e-89 AT5G54110 331 / 6e-115 membrane-associated mannitol-induced (.1) Lus10036495 [exp] 56 / 8e-09 AT4G00170 316 / 4e-110 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10010360 [exp] 55 / 2e-08 AT4G00170 311 / 5e-108 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10007463 [exp] 51 / 4e-07 AT3G60600 306 / 4e-105 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10028937 [exp] 51 / 5e-07 AT3G60600 305 / 2e-101 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10008512 [exp] 48 / 2e-06 AT2G45140 296 / 7e-102 plant VAP homolog 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G041900 [exp] 301 / 7e-103 AT4G21450 359 / 2e-125 PapD-like superfamily protein (.1.2.3) Potri.019G116400 [exp] 290 / 1e-98 AT4G21450 270 / 1e-90 PapD-like superfamily protein (.1.2.3) Potri.013G147800 [exp] 285 / 7e-97 AT4G21450 266 / 5e-89 PapD-like superfamily protein (.1.2.3) Potri.004G033500 [exp] 286 / 8e-97 AT4G21450 358 / 3e-125 PapD-like superfamily protein (.1.2.3) Potri.001G408200 [exp] 273 / 8e-92 AT5G54110 322 / 3e-111 membrane-associated mannitol-induced (.1) Potri.011G126200 [exp] 271 / 4e-91 AT5G54110 288 / 5e-98 membrane-associated mannitol-induced (.1) Potri.014G060900 [exp] 53 / 5e-08 AT2G45140 328 / 9e-115 plant VAP homolog 12 (.1) Potri.002G144800 [exp] 50 / 6e-07 AT4G00170 313 / 5e-109 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Potri.001G152000 [exp] 49 / 2e-06 AT2G45140 296 / 6e-102 plant VAP homolog 12 (.1) Potri.003G076100 [exp] 47 / 6e-06 AT2G45140 262 / 1e-88 plant VAP homolog 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0556 [flax] [poplar] PapD-like PF00635 [flax] [poplar] Motile_Sperm MSP (Major sperm protein) domain
Representative CDS sequence Show only first row Show all	>Lus10018534 pacid=23180450 polypeptide=Lus10018534 locus=Lus10018534.g ID=Lus10018534.BGIv1.0 annot-version=v1.0 ATGCCTTTCTGGCAAACGGCGGGAAATGCAACTACTACATCATCATCTTCATCCTCTTCCTCTTCCAACAACACTTCTTCCACTTCTTCCGGCTCCATGA ACAGCACCGCCCACTACAACAACCGACCCTCCGCCGCCGGCGATCATCACGGCGGAGGAGAAAGATCGACGTCGTCTGCGGCGGCCACGCTCTCTACTGC TACTGCCGTTTCGCTTGTGGCAAAGTCCTTAATTCCCACCCGCAGACGGCTCAAGCTCGATCCTGCTTCCAAGCTCTTCTTCCCTTATGAACCGGGTAAG CAAGTGAGGAGTGCGATTGGGATTAAGAACATTTGCAAATCCCCAATTGCTTTCAAGTTCCAAACAACTGCGCCGAAGAGTTGTTACATGCGTCCACCGG GAGGGATACTTGCACCCGGTGAAAGCCTTATTGCAACCGTGTTCAAGTTTGTGGAGCCACCGGAGAACAATGAAAAGCAACTACTTGATGTGAAGAGCAG AGTCAAGTTCAAGATCATGAGCTTGAAGGTCAAAGGAGAAATGGAATACGTCCCCGAGCTGTTCGACGAGCAGAAAGAGCAAGTAGCAGTTGAGCAAATA CTGCGAGTCGTTTTTCTCGACCCCGAAACCCAAACCCCTGCATTGCAAAAGCTCAAAAGACAGCTAGCTGAGGCGGAAGCTGAGCTCGAGAACCGGAAGA AGCCTCCAGAGGAGCCAAGCCCTCGAACTACTGCTGCCGCTGCTGCTACTGCTGCAGCTGGTGAAGGACTCGTCATAGACGAATGGAAGGAGAGGAGGGA GAGATACTTGGCCCAGCAACAGGTTGAACTTGGTTCCATGTAG
AA sequence Show only first row Show all	>Lus10018534 pacid=23180450 polypeptide=Lus10018534 locus=Lus10018534.g ID=Lus10018534.BGIv1.0 annot-version=v1.0 MPFWQTAGNATTTSSSSSSSSSNNTSSTSSGSMNSTAHYNNRPSAAGDHHGGGERSTSSAAATLSTATAVSLVAKSLIPTRRRLKLDPASKLFFPYEPGK QVRSAIGIKNICKSPIAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEPPENNEKQLLDVKSRVKFKIMSLKVKGEMEYVPELFDEQKEQVAVEQI LRVVFLDPETQTPALQKLKRQLAEAEAELENRKKPPEEPSPRTTAAAAATAAAGEGLVIDEWKERRERYLAQQQVELGSM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21450			PapD-like superfamily protein ...		Lus10018534 [exp]	0	1
AT4G21450			PapD-like superfamily protein ...		Lus10039757 [exp]	1.0	0.9065
AT3G01040		GAUT13	galacturonosyltransferase 13 (...		Lus10032990 [exp]	2.0	0.8403
AT5G04310			Pectin lyase-like superfamily ...		Lus10040426 [exp]	9.2	0.7804
AT3G06550		RWA2	REDUCED WALL ACETYLATION 2, O-...		Lus10017079 [exp]	9.6	0.8218
AT1G06475			unknown protein		Lus10007328 [exp]	9.9	0.7963
AT5G04310			Pectin lyase-like superfamily ...		Lus10023542 [exp]	15.0	0.7627
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10035104 [exp]	15.3	0.8047
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Lus10010638 [exp]	16.5	0.7917
AT5G16720			Protein of unknown function, D...		Lus10004050 [exp]	18.8	0.8202
AT4G22730			Leucine-rich repeat protein ki...		Lus10028916 [exp]	20.8	0.8140

Compare expression of checked genes

Lus10018534 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.