Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28230 189 / 5e-56 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039766 [exp] 622 / 0 AT4G28230 234 / 2e-73 unknown protein Lus10031619 [exp] 264 / 1e-84 AT4G28230 206 / 2e-62 unknown protein Lus10033724 [exp] 261 / 1e-83 AT4G28230 210 / 6e-64 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G116200 [exp] 318 / 3e-105 AT4G28230 257 / 1e-81 unknown protein Potri.013G147500 [exp] 300 / 4e-98 AT4G28230 249 / 2e-78 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018539 pacid=23180381 polypeptide=Lus10018539 locus=Lus10018539.g ID=Lus10018539.BGIv1.0 annot-version=v1.0 ATGAGTGTGTTACAGTACCAAGAAGAAGAAGACGCGGAGATGCAGATATGGAACAACGCAGCATTCGAGGATTCCATGGCGGGGAAGGGCTCTTCGTGGT GGTCTCAGTCCATCGAGTCGAATTGTTCACGCAAAGAGAACTTGAACCCGGATGCGATTTCGGCCACTCCGTTCAAGGGTGGCAAGACAGTCAATCCACT GAAGCAGAAACAGTTGATTTTGTCTAGTAAGAGCTTGATTCGTGATGAGAAGGTGATAGATATGGAAATTGAAGAGGTTGAGAGCGAGATTCGGGGATTA TCGTTGAGGCTTGAATCCCTGCGGCTGGAGAAGGCGGAGAAGCATCTCGCGGAAAGAAGGGCCAGGATCGTGCCGGCGAAGTTCATGGAGCAGAAACAGA GTGTCAAGTTCGACGAGCCAAGATTTGGTAGGAGAGGTGTTAGTTTGGGGCCGGCGGAGATTACGTCGAGAGCGAGGATGATGACGATGACAGCGACCAC CCCTGTTTCTTCCACTTCGAATCGGAGGAAGTCCTGCTTCTGGAAGCTAGACGAGATAGACGAGCTGAAGGTGACGAAGGAGAGAGCTAAAAGCCAGAGC GTCAGTCCGAGATCTCGGAGAACGGCAACGAAACTGCAGCCGCCGCCGAAGCATGCTCAGACAACGGTGGGGTCAAAACGGCCGGTGAAGAAGGACGACG GAGTTCTGTCTCTGATTCAGCCCAAGACTCTGTTTCGAGACGGAGGCGAGAAGTCGGTCAAGAAAGCGGGGCGGATCGTGGCGAGTAGGTACAACCAAAC GTCAACGACGAGTCAACGTCAGTCAACGGAGGCGAGGAAGAGGTCCCTGCCGGAGAGCGACAAGGAAGACGGGAACAAACGGCGGGCTTCTCGAGGTAAC GGGTTGAATCAGAAAACAGAGAGCGTCGTCAAACCGAAGAAGAAGTGGGAGATTCCGGGTAAAGTGTGGGTGTTCAAAGGCAAAGAAGAAGACGATGCTG AGGAATCAGAGGAACTTGTTACCACTGGATTGCGGAAGATCAGGACGATTCGGCCTTGTTCGACGGCGGCGACGCCTAGAAACTCAGGTGCGGCGAAAAG GGTTGCGGATTTAGTCGGTAAAAAATCGTTTTTCGCCATTGATGAGGGTGATGTCGCTGAAGCAGAGAGGTCTGTTTGCTTGGCATTGAGTTTTGAAGAT TAA
AA sequence Show only first row Show all	>Lus10018539 pacid=23180381 polypeptide=Lus10018539 locus=Lus10018539.g ID=Lus10018539.BGIv1.0 annot-version=v1.0 MSVLQYQEEEDAEMQIWNNAAFEDSMAGKGSSWWSQSIESNCSRKENLNPDAISATPFKGGKTVNPLKQKQLILSSKSLIRDEKVIDMEIEEVESEIRGL SLRLESLRLEKAEKHLAERRARIVPAKFMEQKQSVKFDEPRFGRRGVSLGPAEITSRARMMTMTATTPVSSTSNRRKSCFWKLDEIDELKVTKERAKSQS VSPRSRRTATKLQPPPKHAQTTVGSKRPVKKDDGVLSLIQPKTLFRDGGEKSVKKAGRIVASRYNQTSTTSQRQSTEARKRSLPESDKEDGNKRRASRGN GLNQKTESVVKPKKKWEIPGKVWVFKGKEEDDAEESEELVTTGLRKIRTIRPCSTAATPRNSGAAKRVADLVGKKSFFAIDEGDVAEAERSVCLALSFED

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28230			unknown protein		Lus10018539 [exp]	0	1
AT4G28230			unknown protein		Lus10039766 [exp]	1.0	0.9453
AT5G54970			unknown protein		Lus10043108 [exp]	4.5	0.9221
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Lus10027304 [exp]	4.7	0.9149
AT2G02480		STI	STICHEL, AAA-type ATPase famil...		Lus10026270 [exp]	6.0	0.9201
AT2G05790			O-Glycosyl hydrolases family 1...		Lus10015151 [exp]	8.5	0.9164
AT1G65710			unknown protein		Lus10010952 [exp]	9.2	0.9348
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10032562 [exp]	10.1	0.8998
AT4G32830		ATAUR1	ataurora1 (.1)		Lus10005487 [exp]	10.1	0.9305
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Lus10033417 [exp]	11.2	0.9025
AT1G63100	GRAS		GRAS family transcription fact...		Lus10029592 [exp]	11.3	0.9172

Compare expression of checked genes

Lus10018539 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.