Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20800 667 / 0 NDB4 NAD(P)H dehydrogenase B4 (.1) AT4G21490 650 / 0 NDB3 NAD(P)H dehydrogenase B3 (.1) AT4G05020 649 / 0 NDB2 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) AT4G28220 630 / 0 NDB1 NAD(P)H dehydrogenase B1 (.1) AT1G07180 170 / 3e-46 NDA1, ATNDI1 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) AT2G29990 167 / 3e-45 NDA2 alternative NAD(P)H dehydrogenase 2 (.1) AT3G44190 61 / 9e-10 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT5G22140 57 / 1e-08 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) AT5G03630 43 / 0.0005 ATMDAR2 Pyridine nucleotide-disulphide oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039768 [exp] 1064 / 0 AT2G20800 718 / 0.0 NAD(P)H dehydrogenase B4 (.1) Lus10006737 [exp] 655 / 0 AT4G05020 888 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10020087 [exp] 654 / 0 AT4G05020 888 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10011259 [exp] 643 / 0 AT4G05020 909 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10018541 [exp] 624 / 0 AT4G28220 819 / 0.0 NAD(P)H dehydrogenase B1 (.1) Lus10039769 [exp] 585 / 0 AT4G28220 770 / 0.0 NAD(P)H dehydrogenase B1 (.1) Lus10018427 [exp] 552 / 0 AT4G05020 797 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10002599 [exp] 459 / 8e-153 AT4G05020 630 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10002601 [exp] 448 / 1e-150 AT4G05020 609 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G147400 [exp] 794 / 0 AT2G20800 827 / 0.0 NAD(P)H dehydrogenase B4 (.1) Potri.013G147300 [exp] 749 / 0 AT2G20800 801 / 0.0 NAD(P)H dehydrogenase B4 (.1) Potri.004G034100 [exp] 667 / 0 AT4G05020 890 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Potri.011G042500 [exp] 660 / 0 AT4G21490 869 / 0.0 NAD(P)H dehydrogenase B3 (.1) Potri.013G147200 [exp] 622 / 0 AT4G28220 852 / 0.0 NAD(P)H dehydrogenase B1 (.1) Potri.004G036300 [exp] 214 / 5e-62 AT2G29990 678 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.011G044600 [exp] 213 / 8e-62 AT1G07180 681 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Potri.009G047100 [exp] 178 / 2e-49 AT2G29990 757 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.001G217800 [exp] 61 / 9e-10 AT3G44190 536 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.006G114800 [exp] 48 / 1e-05 AT3G52880 708 / 0.0 monodehydroascorbate reductase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00070 [flax] [poplar] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10018540 pacid=23180460 polypeptide=Lus10018540 locus=Lus10018540.g ID=Lus10018540.BGIv1.0 annot-version=v1.0 ATGAAAGGTTTCCGTACGTTCCAGGCTGCCGCCTCCAACGCTTTCCGCGACCACCCCAGATTCTCCAAGCTCCTCGTCGTCGTCAGCGTCAGCGGAGGAG GGTTGTTGGCGTTTTCAGATGCGTCACCGTTCCGGCGGATCTCTGACGAGGCAGACGGCGGACCTAAAAAGAAGCTGGTGGTGCTAGGAACCGGATGGGG TGGTACCACTTTCCTCAAGAACCTGAAAACTTCTGCTTACGATGTGCAAGTTGTCTCGCCTCATAACTACTTCACGTTCACTCCTCTGCTTCCCAGCGTC ACCAATGGCACCGTCGAGGCTCGGAGCATTGTCGAACCGATACGAAACATCGTCCATGGTAAACCATACAATGTCAATTTTGAGGAAGCCGAGTGCTACA AGATCGATCCGGTGAACAAGAAGGTGTACTGCCGATCGAACAAGGCTCAGAACGATTTTGAATTGGATTATGATGTGTTGGTGATAGCAATGGGAGCTCG TGTGAACACCTTCAACACTCCTGGCGTTGAAGAACACGCTCATTTCCTCAAGGAAGTTGACGATGCTCAGAAGCTCAGGAGATCTATAATCGACTGCTAT GAGCGAGCTAGCCTTCATACAGTTAGCGAGGAAGACAAGAAGCGGATCATGCACTTTGTAGTCGTCGGTGGAGGTCCCACCGGAGTGGAGTATGCTGCTG AGCTTCACGATTTCGCTTCTCAGGATTTGGCTCGATTGTATCCGTCTCTGAAGGAATATCTCAAGATCACATTGCTCGAAGCCGGAAACCACATTCTGCC CATGTTTCACAAGAAAGTTACTGACTTTGCCAACGAGAAGTTCCAGAAGGATCAGATCGAGGTGAAGACCGGATCGATGGTGGTGAAAGTTTCGGACAAG GATATCTCCGCAAAGGATCGAACCACAGGCCAAGTCGAGTCGATTCCTTACGGTGTGGTTCTGTGGTCAACCGGAATTGCTACTCGTCCTGTCATAACCG AGTTGATGCAGCAGATCGGTCAGGCTGGGAAGCGGGTTATGGCTACCGACGAATGGCTGAAAGTTCAAGGATGCGAGGATGTTTATGCTCTTGGAGATTG TGCCTCCATAGCTCAACGGAAAGTCTCCGATGATGTGCCTGCCATATTCAACACAGTGGACAAGAACTCGGCCGGTAGTCTAGACGCCAAGGATTTCAAG GAGTTTGTCAACGACATCTGTGAGAGGTACCCGCAGGTGAGGAAGTATATGGAGAAGAACAAACTAAAAAATTTCGATGCTTTGCTGAAGAATGCTACTC AGAACCTCGACAAGAAAGTAGTTGATATCGAGGCGCTTAAGAAGGCTCTGTCGGAAGCTGATTCTCAAGTGTCGATGCTCCCCCCAACCGCTCAGGTTGC TGCTCAACAAGGTGAATATCTAGCAGATTGTTTCAACAGGGCTAAACGTTGCGAAAAGAATCCTGAAGGTCCTGTCAGGTTTCAGGAAAATGGCCGATAT GCCCTCCATCCTTTCAGTTACAAACATTCTGGACAATTTGCTCCACTGGGAGGGGAGAAAGCTGCTGTTCAGTTCCCCGGAGACTGGGTTTCCATTGGCC ATGCAAGTCAAGGTCTCTGGTACACAGTCTATGCAAGCAAGCTTGTGACCTGGCGCACGAAGGTCCTGGTCGTGTCCGACTGGTTCAGGAGGTTCACATT CGGTCGGGATTCAAGTGCTCTTTGA
AA sequence Show only first row Show all	>Lus10018540 pacid=23180460 polypeptide=Lus10018540 locus=Lus10018540.g ID=Lus10018540.BGIv1.0 annot-version=v1.0 MKGFRTFQAAASNAFRDHPRFSKLLVVVSVSGGGLLAFSDASPFRRISDEADGGPKKKLVVLGTGWGGTTFLKNLKTSAYDVQVVSPHNYFTFTPLLPSV TNGTVEARSIVEPIRNIVHGKPYNVNFEEAECYKIDPVNKKVYCRSNKAQNDFELDYDVLVIAMGARVNTFNTPGVEEHAHFLKEVDDAQKLRRSIIDCY ERASLHTVSEEDKKRIMHFVVVGGGPTGVEYAAELHDFASQDLARLYPSLKEYLKITLLEAGNHILPMFHKKVTDFANEKFQKDQIEVKTGSMVVKVSDK DISAKDRTTGQVESIPYGVVLWSTGIATRPVITELMQQIGQAGKRVMATDEWLKVQGCEDVYALGDCASIAQRKVSDDVPAIFNTVDKNSAGSLDAKDFK EFVNDICERYPQVRKYMEKNKLKNFDALLKNATQNLDKKVVDIEALKKALSEADSQVSMLPPTAQVAAQQGEYLADCFNRAKRCEKNPEGPVRFQENGRY ALHPFSYKHSGQFAPLGGEKAAVQFPGDWVSIGHASQGLWYTVYASKLVTWRTKVLVVSDWFRRFTFGRDSSAL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20800		NDB4	NAD(P)H dehydrogenase B4 (.1)		Lus10018540 [exp]	0	1
AT2G20800		NDB4	NAD(P)H dehydrogenase B4 (.1)		Lus10039768 [exp]	1.0	0.9349
AT1G72200			RING/U-box superfamily protein...		Lus10029794 [exp]	2.0	0.8169
AT1G01420		UGT72B3	UDP-glucosyl transferase 72B3 ...		Lus10001905 [exp]	4.5	0.8524
AT1G50920			Nucleolar GTP-binding protein ...		Lus10038748 [exp]	8.5	0.7707
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10040526 [exp]	8.7	0.8374
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10036704 [exp]	9.2	0.8140
AT2G40460			Major facilitator superfamily ...		Lus10034206 [exp]	9.2	0.8051
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10005879 [exp]	11.8	0.8144
AT1G22275		ZYP1b	Myosin heavy chain-related pro...		Lus10036473 [exp]	14.9	0.7641
					Lus10010603 [exp]	15.5	0.7739

Compare expression of checked genes

Lus10018540 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.