Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28220 743 / 0 NDB1 NAD(P)H dehydrogenase B1 (.1) AT4G05020 684 / 0 NDB2 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) AT4G21490 675 / 0 NDB3 NAD(P)H dehydrogenase B3 (.1) AT2G20800 630 / 0 NDB4 NAD(P)H dehydrogenase B4 (.1) AT2G29990 211 / 2e-61 NDA2 alternative NAD(P)H dehydrogenase 2 (.1) AT1G07180 208 / 3e-60 NDA1, ATNDI1 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) AT5G08740 62 / 4e-10 NDC1 NAD(P)H dehydrogenase C1 (.1) AT3G44190 58 / 6e-09 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT5G22140 54 / 2e-07 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039769 [exp] 1038 / 0 AT4G28220 770 / 0.0 NAD(P)H dehydrogenase B1 (.1) Lus10011259 [exp] 660 / 0 AT4G05020 909 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10006737 [exp] 657 / 0 AT4G05020 888 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10020087 [exp] 651 / 0 AT4G05020 888 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10039768 [exp] 588 / 0 AT2G20800 718 / 0.0 NAD(P)H dehydrogenase B4 (.1) Lus10018540 [exp] 583 / 0 AT2G20800 718 / 0.0 NAD(P)H dehydrogenase B4 (.1) Lus10018427 [exp] 543 / 0 AT4G05020 797 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10002601 [exp] 459 / 4e-155 AT4G05020 609 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10002599 [exp] 442 / 6e-146 AT4G05020 630 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G147200 [exp] 857 / 0 AT4G28220 852 / 0.0 NAD(P)H dehydrogenase B1 (.1) Potri.004G034100 [exp] 674 / 0 AT4G05020 890 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Potri.013G147400 [exp] 662 / 0 AT2G20800 827 / 0.0 NAD(P)H dehydrogenase B4 (.1) Potri.011G042500 [exp] 662 / 0 AT4G21490 869 / 0.0 NAD(P)H dehydrogenase B3 (.1) Potri.013G147300 [exp] 661 / 0 AT2G20800 801 / 0.0 NAD(P)H dehydrogenase B4 (.1) Potri.011G044600 [exp] 233 / 5e-69 AT1G07180 681 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Potri.004G036300 [exp] 232 / 6e-69 AT2G29990 678 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.009G047100 [exp] 209 / 7e-61 AT2G29990 757 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.007G098700 [exp] 70 / 2e-12 AT5G08740 710 / 0.0 NAD(P)H dehydrogenase C1 (.1) Potri.001G217800 [exp] 64 / 9e-11 AT3G44190 536 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00070 [flax] [poplar] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10018541 pacid=23180485 polypeptide=Lus10018541 locus=Lus10018541.g ID=Lus10018541.BGIv1.0 annot-version=v1.0 ATGTCGTTCTTCAGCAGAGCAACTCGCAGCTTCCCTGCTTCAACTTCCAAGTTCCTTGCCCTATTCACCATAAGTAGTGGAGGTCTGGTGGCATACTCAG ACTCACAAGTGGAAACTGAAGTGCCTGCTTCCATTGTCAACAAAAATGACGGCAAGAAGAAGAGAGTTGTGGTTCTTGGGACAGGATGGGCCGGAACAAG CTTCGTCAAGGATCTGGACGCTTCTATGTACGATGTTCAGGTCGTGTCGCCGAGAAATTACTTTGCTTTCACTCCTTTGCTCCCTAGTGTCACTTGTGGA ACGGTTGAGGCCAGAAGCATTGTCGAGCCTATTAGAAATATGATTAGGAAGAGAAATGGAGAGATTCAGTTCTTGGAGGCGGATTGTGTTAAGATAGATT CCGAGAAGAACAGGATATTCTGTAAAGCTAGCTTTGACAACAAATCCGTGGGGAAAGAGGAGTTCTCTCTGGAGTATGACTACTTGGTGATTGCAGTTGG AGCTCAAGTCAACACTTTCAACACGCCCGGTGTCAACGAGAACTGCCATTTTCTGAAGGATTTAGAGGATGCTCAGAGGCTTCGAAGGACGGTGATCGAT TGCTTCGAAAAGGCCGTCCTTCCTGATCTAACCGAAGAAGAGCGAAGAACGAACCTTCATTTCGTGATTGTTGGTGGCGGTCCGACCGGTGTCGAGTTTG CTGCTGAGCTGCATGACTTTCTCATTGAAGACTTGGTCAACATCTATCCGACCGTGAAGGATCTAGTCAAGATCAGTCTGGTCCAATCCGGAGATCATAT TTTGAACACGTTTGACGAACGCATAAGTTCGTTCGCTGAACAGAAGTTCGGGAGGGACGGAATCGAAGTCCAGACGGGATGTCGAGTTGTGAGTGTTTCT GAGAAAGAAATTTCTATGAAGATGAAGCCTACAGGAGAAGTCTGTTCCATACCTCATGGATTGGTTCTTTGGTCTACCGGTATAAGCACTCGGCCAGTTG TGCAGGACTTCATGGACCAAATCGGCCAGGGTAATAGGCGTATTCTCGCAACTAACGAGTGGCTGCGAGTGAAAGAAACCGAAAACATCTATGCACTTGG TGATTGTGCCACAATTGATCAACGTAAAATCATGGATGACATTGCGGAGATATTCGAGGCGGCTGATGCGGATAAGTCGGGAACGTTGACCATGGAGGAA TTCAAGGCTGTGGTGGGTGATATCGTGGCGAGGTATCCTCAAGTGGAGACGTATTTGAACAACCAGCATCTGGGAGCAGTGACGGATCTGTTGAAAGATG CACTGACCGATGACAAGAAAGAAATCGACATTGAAGGTTTCAAGAAGGCCATCCGTCTAGTTGATTCACAGACCACTAGTCTACCTGCAACTGCACAGGT TGCTGCACAACAAGGCAAATACCTCGCGAGATGCTTCAACAGGAAAGACCAGTGCAAGGAGCATCCTGAAGGTCCTCGTCGGTTTGCACGTGCTGGAGGC CGTCATTTCTTTGCTCCCTTCCGGTACAAGCATTTAGGGCAGTTTGCGCCTTTGGGAGGAGAGCAAGCCGCTGCTGAACTTCCTGGTGACTGGGTTTCCA TGGGTCACAGTACTCAGTGGCTCTGGTATTCGGTCTACGCCAGCAAGCAAGTCAGCTGGCGTACACGATACTTGGTCGTATCCGACTGGACTCGAAGATA CATTTTCGGTAGAGACTCCAGCCGTATTTGA
AA sequence Show only first row Show all	>Lus10018541 pacid=23180485 polypeptide=Lus10018541 locus=Lus10018541.g ID=Lus10018541.BGIv1.0 annot-version=v1.0 MSFFSRATRSFPASTSKFLALFTISSGGLVAYSDSQVETEVPASIVNKNDGKKKRVVVLGTGWAGTSFVKDLDASMYDVQVVSPRNYFAFTPLLPSVTCG TVEARSIVEPIRNMIRKRNGEIQFLEADCVKIDSEKNRIFCKASFDNKSVGKEEFSLEYDYLVIAVGAQVNTFNTPGVNENCHFLKDLEDAQRLRRTVID CFEKAVLPDLTEEERRTNLHFVIVGGGPTGVEFAAELHDFLIEDLVNIYPTVKDLVKISLVQSGDHILNTFDERISSFAEQKFGRDGIEVQTGCRVVSVS EKEISMKMKPTGEVCSIPHGLVLWSTGISTRPVVQDFMDQIGQGNRRILATNEWLRVKETENIYALGDCATIDQRKIMDDIAEIFEAADADKSGTLTMEE FKAVVGDIVARYPQVETYLNNQHLGAVTDLLKDALTDDKKEIDIEGFKKAIRLVDSQTTSLPATAQVAAQQGKYLARCFNRKDQCKEHPEGPRRFARAGG RHFFAPFRYKHLGQFAPLGGEQAAAELPGDWVSMGHSTQWLWYSVYASKQVSWRTRYLVVSDWTRRYIFGRDSSRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28220		NDB1	NAD(P)H dehydrogenase B1 (.1)		Lus10018541 [exp]	0	1
AT5G14120			Major facilitator superfamily ...		Lus10025123 [exp]	1.0	0.9713
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Lus10009274 [exp]	2.0	0.9554
AT3G16230			Predicted eukaryotic LigT (.1....		Lus10037578 [exp]	2.2	0.9313
AT4G28220		NDB1	NAD(P)H dehydrogenase B1 (.1)		Lus10039769 [exp]	3.7	0.9243
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10004270 [exp]	4.9	0.9272
AT4G37880			LisH/CRA/RING-U-box domains-co...		Lus10019837 [exp]	5.5	0.9475
AT2G30600			BTB/POZ domain-containing prot...		Lus10012262 [exp]	8.1	0.9295
AT2G30070		ATKUP1, ATKT1P,...	POTASSIUM UPTAKE TRANSPORTER 1...		Lus10032154 [exp]	8.8	0.9259
AT2G30880			Pleckstrin homology (PH) domai...		Lus10020739 [exp]	10.2	0.9289
AT5G23050		AAE17	acyl-activating enzyme 17 (.1)		Lus10038966 [exp]	11.8	0.9290

Compare expression of checked genes

Lus10018541 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.