Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28390 81 / 3e-18 Protein kinase superfamily protein (.1.2) AT1G17230 52 / 3e-08 Leucine-rich receptor-like protein kinase family protein (.1) AT1G77280 51 / 6e-08 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G65530 50 / 7e-08 Protein kinase superfamily protein (.1) AT3G59750 50 / 1e-07 Concanavalin A-like lectin protein kinase family protein (.1) AT1G53730 49 / 2e-07 SRF6 STRUBBELIG-receptor family 6 (.1.2) AT1G76370 49 / 3e-07 Protein kinase superfamily protein (.1) AT1G07870 49 / 3e-07 Protein kinase superfamily protein (.1.2) AT1G16670 48 / 4e-07 Protein kinase superfamily protein (.1) AT2G20850 48 / 4e-07 SRF1 STRUBBELIG-receptor family 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039770 [exp] 149 / 2e-43 AT1G28390 379 / 2e-127 Protein kinase superfamily protein (.1.2) Lus10016371 [exp] 61 / 2e-11 AT3G51990 402 / 3e-138 Protein kinase superfamily protein (.1) Lus10018959 [exp] 54 / 7e-09 AT3G05140 512 / 8e-180 ROP binding protein kinases 2 (.1) Lus10025713 [exp] 53 / 1e-08 AT5G65530 461 / 8e-161 Protein kinase superfamily protein (.1) Lus10019600 [exp] 52 / 2e-08 AT1G61420 71 / 1e-18 S-locus lectin protein kinase family protein (.1) Lus10040021 [exp] 52 / 3e-08 AT4G19810 278 / 5e-89 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10005103 [exp] 51 / 7e-08 AT5G16000 998 / 0.0 NSP-interacting kinase 1 (.1) Lus10034350 [exp] 50 / 7e-08 AT5G16000 1018 / 0.0 NSP-interacting kinase 1 (.1) Lus10035949 [exp] 50 / 9e-08 AT5G65530 521 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G158600 [exp] 84 / 9e-20 AT1G28390 397 / 3e-134 Protein kinase superfamily protein (.1.2) Potri.001G260800 [exp] 58 / 2e-10 AT3G51990 419 / 5e-146 Protein kinase superfamily protein (.1) Potri.009G055200 [exp] 55 / 2e-09 AT3G51990 409 / 7e-141 Protein kinase superfamily protein (.1) Potri.004G221800 [exp] 55 / 2e-09 AT5G23170 273 / 1e-89 Protein kinase superfamily protein (.1) Potri.003G010300 [exp] 52 / 1e-08 AT5G23170 270 / 3e-88 Protein kinase superfamily protein (.1) Potri.010G228200 [exp] 51 / 5e-08 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G037000 [exp] 51 / 5e-08 AT4G03390 645 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.014G136300 [exp] 49 / 3e-07 AT5G35960 556 / 0.0 Protein kinase family protein (.1) Potri.003G150000 [exp] 49 / 4e-07 AT3G47570 506 / 4e-162 Leucine-rich repeat protein kinase family protein (.1) Potri.005G185500 [exp] 48 / 4e-07 AT5G56790 348 / 1e-111 Protein kinase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018542 pacid=23180373 polypeptide=Lus10018542 locus=Lus10018542.g ID=Lus10018542.BGIv1.0 annot-version=v1.0 ATGGGTTGTCTTCCTTGCAATGCTGACTCCGCCGTCGCAATCTGCGGCGACGGTCGATCTCACCATAACAAACCCACATCAACCACCACCAAGCACTTCA CTTACTCCGAATTAGTCGCCGCCACCGGTGACTTCTCCGCCGACAACTTCCTCGGAAAGGGTAGCCACGGAGCTGTTTACAAAGCCACCCTCGACGGCGG TAAGCTGATCGCCGCCGTCAAACGGAACAGCCATCCAGCGATATGGTCCCCCTCACATTGTTACCCAACCCCCCCCTCCAGGGGAAAAGCTGGTCCCCCC CCGCAAACCGGACCAGCCACCACCAACCTCCGACCAATTTCAGAACGGCGCCGTCGCCGGCGGAGAACGAGATTGAGATCCTGTCGAAAGTCCGACACCC GAGGTTGGTCAACCTCATCGGCTTCTGCGCCGAGCGGAGATTAA
AA sequence Show only first row Show all	>Lus10018542 pacid=23180373 polypeptide=Lus10018542 locus=Lus10018542.g ID=Lus10018542.BGIv1.0 annot-version=v1.0 MGCLPCNADSAVAICGDGRSHHNKPTSTTTKHFTYSELVAATGDFSADNFLGKGSHGAVYKATLDGGKLIAAVKRNSHPAIWSPSHCYPTPPSRGKAGPP PQTGPATTNLRPISERRRRRRRTRLRSCRKSDTRGWSTSSASAPSGD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28390			Protein kinase superfamily pro...		Lus10018542 [exp]	0	1
AT1G65890		AAE12	acyl activating enzyme 12 (.1)		Lus10020787 [exp]	2.4	0.8789
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Lus10040956 [exp]	3.6	0.9116
AT4G32780			phosphoinositide binding (.1)		Lus10009508 [exp]	5.7	0.8733
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10011223 [exp]	6.6	0.8821
AT5G43810		PNH, ZLL, AGO10	ZWILLE, PINHEAD, ARGONAUTE 10,...		Lus10039386 [exp]	9.5	0.8711
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Lus10012020 [exp]	11.0	0.8724
					Lus10039387 [exp]	11.2	0.8702
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10026010 [exp]	12.0	0.8698
AT1G69440		ZIP, AGO7	ZIPPY, ARGONAUTE7, Argonaute f...		Lus10036794 [exp]	14.4	0.8439
AT2G18360			alpha/beta-Hydrolases superfam...		Lus10025873 [exp]	14.8	0.8508

Compare expression of checked genes

Lus10018542 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.