Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03510 509 / 8e-173 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20230 281 / 7e-82 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G20540 271 / 1e-80 MEF21 mitochondrial editing factor 21 (.1) AT3G49142 267 / 1e-77 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 271 / 4e-77 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G59600 260 / 2e-76 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G46790 254 / 4e-73 CRR2 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 256 / 5e-73 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G25360 256 / 8e-73 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37170 254 / 9e-73 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003790 [exp] 272 / 1e-78 AT1G17630 659 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10020743 [exp] 263 / 3e-76 AT1G04840 771 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027311 [exp] 258 / 9e-76 AT1G33350 621 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005987 [exp] 257 / 1e-75 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018223 [exp] 262 / 4e-75 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036029 [exp] 256 / 4e-75 AT5G27110 577 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 263 / 2e-74 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038400 [exp] 261 / 1e-73 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 257 / 3e-73 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G035900 [exp] 276 / 4e-82 AT2G20540 709 / 0.0 mitochondrial editing factor 21 (.1) Potri.001G243800 [exp] 276 / 4e-82 AT5G59600 639 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G089400 [exp] 270 / 4e-80 AT1G33350 639 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G005700 [exp] 274 / 5e-80 AT3G49142 912 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G136200 [exp] 267 / 8e-77 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.006G245300 [exp] 268 / 3e-76 AT3G22690 570 / 0.0 unknown protein Potri.002G021300 [exp] 265 / 3e-76 AT1G20230 852 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G239600 [exp] 263 / 3e-76 AT5G59200 694 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G086200 [exp] 263 / 9e-76 AT4G14820 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G369900 [exp] 261 / 1e-75 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10018543 pacid=23180504 polypeptide=Lus10018543 locus=Lus10018543.g ID=Lus10018543.BGIv1.0 annot-version=v1.0 ATGAAGAAGAAGACGAAGCATGGGAGTAAATCAACAGGGATCGATCGGATCTCAGAATTACCGGATGAAATCATCCACTGCATCCTCCGCTGCTTGAAGT CCTCCAGGAAAGCAGCATTGACTAGTACTCTGTCCAGGCGTTGGCTCCGTGCTTGGCGATCGTATCCAATCCTGAAGTTCGACTATCAGGATCGAAAGAA AGTATCCAATCCCAAGAACAACTGCAAAAAACCGGCCTTGGAATGTTTTCAGGAATTCGCCAAGGCAGCTATCGAGAGGTTTAATCGTGACGAGCGTTTG CTGATAGAATCGCTTGAGGTTTCGTTACCAAGGGGCGACAAGGCAGCCTATTCGCCATTGGCTAATCAGCTGCTGGATTTAGCATCAAGTAGGAAATCCG AAGAGATCTCGATCACCGGAAAGTGGTCAAATTTTTCAAACCTCCGATTGACCTTTCATAAATCATCCAATTCCAACTTGAAGATTCTCCGGTTGGGAGC TATCCAGTTTGCCGACAACCAACACGGTAATGATCTCCCGCTTTCTCTGCCTTCTCTCCTTATCTTAGACCTGAATGATGTCCAATATACGGACTATCGA CTTTTGGCGAACTTGATTGCTAGCTCTCCCGTTCTTGAAACCCTAAAGCTTAAGTTTCTTCCGCAATTGAGTAAGCTCCAGCTTTGTGATCTTACCAACT TGAAGACGCTCGTGATCGATGACTGTAATTGCCTCCAGGAAATTGAGATCTCAGCTGCTAAACTCGAGACTCTGTCTATCAAGGACCCAACTACGTTCAC AAGAATTGCAATTATAGCTCCTCGGTTGGCTGTTTTGGATTTGACATCTCCAAGATCAAGAATCGATGATTTCGGTCCGGTGATTTCAAAGTTCAAACAT CTGAAATCCTTAAATCTGGATGTAAGCCAATCTTACGTGAAGAAGCTGAAGCTTTCTAATCCTAACCTCGAGGAGTTCACACTGTTTCCACCGCGTGGAT TGGAAGAGATTGAAGTTGATGCTGGATCAGAATTGTCGAAATTCTTCCTCAAATATCAAGCTGTCCCGGGGACATTAAACATATGTGAAATCACGAGTGC CGCCATCGCTGCCACTAATGATTGTAAGGCTGAGTTTCCGCTCCATCATAATGTTTGTGATACTCAAGCATGGTTTGTTGGATTGAAGAGTTTCATCGCC AAGTTCACGCAGTTCAACACTATTATGATTCGCTGCTACGCCAAGGAGGTTACCTTCAACGAGGAAAAAGCTGATCACAATGTACATCCAAGGGCCATCG AGAACTTGATCATAAGCTCGGTTCCAAGCATGGACCCAAGAGCTCTTTTGGATAATCTATTTTGGACTTGTCGTCCTAGGTTTTTTACCATAGTTGATTC ATTTTCGAAATTGAAAAGAAAAACCAATGTTGGTTCCAAAGGCAGACAACATGAGCAGATGACCATGGCATTTTTGAATTTAACTTCTTCGGTATACCGG CTACCGTCCACGAAGATAAGTGGAGAAGGGTCTTGTGAGCACCGGAGTTGGCTACGTCAACTTTACAAAGTGAAGAAGACAACACAAGGGCTAGAGGTGA CCGGGGGACCATCGCGAATGTGCTTCGAGCTAACTTGGAGCAACTCCAGATTGATCTCCCTCACCAAGCAACTAACCCTCTTAGTAAACAGAGGCAATCA CGAACAAGCACTGGCTCTGTTTCATCACATGCAATCCTCAGTAGCTCTCGATCCTCCCGTTTTCCCTCTTGTGCTCAAATCCTGCGCAGCAATTCGCCAA CCTCAGTTAGGCTCCGCGATTCACGCCATCGTTCGGAGAATGGGTCTCCTCTCGAACCCATTCGTGGCGAGTTCTCTGATCGACATGTACGGCAAATGTG TGTCGGTTGACATTGCACGCCAACTGTTCGACGAAATTCCCCAGAGAAACGTTGTTGTCTGGAATGTGATGGTATCTCTGTACACACATTCCCGGATGGT CCGCGAGGCATTGCTTGTGTTTAACGCGATGGATGTCGAGCCAAGTGTTTCAACTCTCAACTCGCTGATTTCCGGCTTGGCGGAGGAGGAGGATGGAGCT GTGAAAGCGATTAGAGTTTACAGGAAAGTGAATGAAGTGGGGTTGAAACCGAATTTGATTACGCTTCTTGCTCTATTGCCAGCTTGTGCGGACATGGCAT CGTTGAATTTCATCAGGGAGATACACGGCTATTCGATAAGGAATCATATCGATCCGCATCCACAGATAAGGAGCGGAATCGTGGAGGCATACGGAAGGTG TGGCTCTCTGCACAGCGCAGCAACAGTCTTCCAAACCATGGAAGAAAAAGATGTCGTTCCGTGGAGCAGCTTGATATCAGCTTACGCTCTACATGGACAA GCAATGACCGCGCTGGAGATATTCAAACAGATGGAATCGGCGAAAGTGCGCCCCGATGAGATTACATTTCTTGCAGTTCTGAAAGCTTGCAGTCACGCTG GATTGGCCGACGAAGCGATCGGTTACCTGAAAAAGATGCAGGGTGACTACGGTTTATCCCCAAGTAGCGATCATTACTCTTGTTTGATCGATGTCTTGAG CAGGGCCGGGAGGTTGAACGAGGCTTATGAGGTTATACGTGGGATGCCGGTGAAGGCGACTGCGAAAGCTTGGGGTGCGCTTCTTGCTGCGTGTCGAACT CATGGCGAGACGGAACTTGCAGAGATTGCTGCTAGAGCTCTGTTCGAGATCGAACCTGATAATCCTTCGACGTATGTGCTGTTGTCTACGGTTTATGCTA ATGCAGGGAGATTAGAGGAAGCTGACAGAATCAGGAGTGGGATGAAAGGCTTGGGAGTGAAAGTTGATCCTGGCGGGAGCTGGATTCTGTGA
AA sequence Show only first row Show all	>Lus10018543 pacid=23180504 polypeptide=Lus10018543 locus=Lus10018543.g ID=Lus10018543.BGIv1.0 annot-version=v1.0 MKKKTKHGSKSTGIDRISELPDEIIHCILRCLKSSRKAALTSTLSRRWLRAWRSYPILKFDYQDRKKVSNPKNNCKKPALECFQEFAKAAIERFNRDERL LIESLEVSLPRGDKAAYSPLANQLLDLASSRKSEEISITGKWSNFSNLRLTFHKSSNSNLKILRLGAIQFADNQHGNDLPLSLPSLLILDLNDVQYTDYR LLANLIASSPVLETLKLKFLPQLSKLQLCDLTNLKTLVIDDCNCLQEIEISAAKLETLSIKDPTTFTRIAIIAPRLAVLDLTSPRSRIDDFGPVISKFKH LKSLNLDVSQSYVKKLKLSNPNLEEFTLFPPRGLEEIEVDAGSELSKFFLKYQAVPGTLNICEITSAAIAATNDCKAEFPLHHNVCDTQAWFVGLKSFIA KFTQFNTIMIRCYAKEVTFNEEKADHNVHPRAIENLIISSVPSMDPRALLDNLFWTCRPRFFTIVDSFSKLKRKTNVGSKGRQHEQMTMAFLNLTSSVYR LPSTKISGEGSCEHRSWLRQLYKVKKTTQGLEVTGGPSRMCFELTWSNSRLISLTKQLTLLVNRGNHEQALALFHHMQSSVALDPPVFPLVLKSCAAIRQ PQLGSAIHAIVRRMGLLSNPFVASSLIDMYGKCVSVDIARQLFDEIPQRNVVVWNVMVSLYTHSRMVREALLVFNAMDVEPSVSTLNSLISGLAEEEDGA VKAIRVYRKVNEVGLKPNLITLLALLPACADMASLNFIREIHGYSIRNHIDPHPQIRSGIVEAYGRCGSLHSAATVFQTMEEKDVVPWSSLISAYALHGQ AMTALEIFKQMESAKVRPDEITFLAVLKACSHAGLADEAIGYLKKMQGDYGLSPSSDHYSCLIDVLSRAGRLNEAYEVIRGMPVKATAKAWGALLAACRT HGETELAEIAARALFEIEPDNPSTYVLLSTVYANAGRLEEADRIRSGMKGLGVKVDPGGSWIL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03510			Tetratricopeptide repeat (TPR)...		Lus10018543 [exp]	0	1
AT1G50270			Pentatricopeptide repeat (PPR)...		Lus10023251 [exp]	10.2	0.7321
AT5G60670			Ribosomal protein L11 family p...		Lus10015085 [exp]	13.4	0.7326
AT5G12100			pentatricopeptide (PPR) repeat...		Lus10014365 [exp]	18.2	0.6902
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10021068 [exp]	19.4	0.7121
AT5G60670			Ribosomal protein L11 family p...		Lus10026506 [exp]	20.3	0.7269
AT1G70600			Ribosomal protein L18e/L15 sup...		Lus10039528 [exp]	20.7	0.6973
AT5G27820			Ribosomal L18p/L5e family prot...		Lus10031487 [exp]	26.2	0.6496
AT3G55605			Mitochondrial glycoprotein fam...		Lus10001017 [exp]	37.0	0.7010
AT1G16740			Ribosomal protein L20 (.1)		Lus10029597 [exp]	43.2	0.6600
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Lus10031700 [exp]	43.2	0.6783

Compare expression of checked genes

Lus10018543 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.