Gene [FLAX] | FIBexDB

Lus10018544 [FLAX]

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JGI Phytozome v13

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Symbol

Arabidopsis homologues

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No hit found

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10018543 [exp]	149 / 4e-41	AT1G03510	534 / 0.0	Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Lus10037440 [exp]	102 / 7e-25	AT1G69630	84 / 5e-17	F-box/RNI-like superfamily protein (.1)
Lus10029998 [exp]	85 / 9e-19	AT1G05020	437 / 5e-139	ENTH/ANTH/VHS superfamily protein (.1)
Lus10029986 [exp]	81 / 1e-17	AT1G20920	347 / 2e-109	P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Lus10007227 [exp]	71 / 1e-14	ND	/
Lus10020716 [exp]	66 / 3e-13	ND	/
Lus10035617 [exp]	62 / 2e-11	ND	/
Lus10030016 [exp]	63 / 3e-11	AT2G32970	799 / 0.0	unknown protein
Lus10039716 [exp]	61 / 1e-10	ND	/

Poplar homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.012G099400 [exp]	41 / 0.0005	AT5G44950	77 / 1e-14	F-box/RNI-like/FBD-like domains-containing protein (.1)

PFAM info

Representative CDS sequence

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>Lus10018544 pacid=23180430 polypeptide=Lus10018544 locus=Lus10018544.g ID=Lus10018544.BGIv1.0 annot-version=v1.0

ATGTATCCTCCCGCGAAGCAGCTGAAAATTTCCAGTCCTAACCTCGAGAAGTTCACACTGGTTGTATCGCCTCGATTGGAAGAGATCGAACTCGATGCAA

CGTCAGGTTTGGCGAAAGTCTTTCTCATATATCGAGAACTAGTACCGCTTCGTAAATTAAAGAAAATTGAGATCGGGAATGCCGCCATCTCTGCAACTTA

TGAATGGAAGGTTGAGTTTACTATGACCACTGCCATTCGAAACACACACACATGGTTTGTTGAATTAAGGACTTTCATGACAAAATTCATGCAGTTTCAA

ACGATTAGCATTGGTTGCGCCAACAATCAGGTTGCTTTTAAGGATGAAGAAATAGATCACACCGAACTTCCAAGGACTATCCAGCACTTGAAAATCGGGT

TCAAATGTGATGTTGTAAACGGAAGATCTTTCCTGAATGGTCTATTTTGGACTTGTCGTCCTACTTCATTGACCATAATTGATAGTAAGCCTATAGAAGC

TGAGACGCTTTCCCATTTATTCTTGAAGTTGACTGCGCAATATTCACTAAAACCTTGCATGGAGGACAATGAAGGAGGTTTTAATGAGTATCGGAATTGG

TTATATCAACTCAAGGATGTGAAGATGATAAAGCAGCTCAGCAATTGCTCGAATACGTATACTTACTTCGAGCTAACTTGGTTCTAA

AA sequence

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>Lus10018544 pacid=23180430 polypeptide=Lus10018544 locus=Lus10018544.g ID=Lus10018544.BGIv1.0 annot-version=v1.0

MYPPAKQLKISSPNLEKFTLVVSPRLEEIELDATSGLAKVFLIYRELVPLRKLKKIEIGNAAISATYEWKVEFTMTTAIRNTHTWFVELRTFMTKFMQFQ

TISIGCANNQVAFKDEEIDHTELPRTIQHLKIGFKCDVVNGRSFLNGLFWTCRPTSLTIIDSKPIEAETLSHLFLKLTAQYSLKPCMEDNEGGFNEYRNW

LYQLKDVKMIKQLSNCSNTYTYFELTWF

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10018544 [exp]	0	1

Lus10018544 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.