Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06810 221 / 3e-63 Mitochondrial transcription termination factor family protein (.1) AT4G19650 176 / 6e-49 Mitochondrial transcription termination factor family protein (.1) AT3G60400 105 / 4e-24 Mitochondrial transcription termination factor family protein (.1) AT5G45113 89 / 4e-19 mitochondrial transcription termination factor-related / mTERF-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039774 [exp] 614 / 0 AT5G06810 398 / 5e-127 Mitochondrial transcription termination factor family protein (.1) Lus10012021 [exp] 228 / 1e-68 AT5G06810 437 / 5e-141 Mitochondrial transcription termination factor family protein (.1) Lus10038336 [exp] 168 / 3e-46 AT4G19650 475 / 2e-162 Mitochondrial transcription termination factor family protein (.1) Lus10013142 [exp] 88 / 2e-18 AT3G60400 559 / 0.0 Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G048200 [exp] 296 / 2e-94 AT5G06810 501 / 3e-165 Mitochondrial transcription termination factor family protein (.1) Potri.016G048400 [exp] 287 / 4e-91 AT5G06810 483 / 9e-159 Mitochondrial transcription termination factor family protein (.1) Potri.016G048300 [exp] 283 / 9e-90 AT5G06810 485 / 2e-159 Mitochondrial transcription termination factor family protein (.1) Potri.012G118200 [exp] 199 / 3e-57 AT4G19650 549 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.014G044900 [exp] 95 / 1e-20 AT3G60400 598 / 0.0 Mitochondrial transcription termination factor family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018548 pacid=23180416 polypeptide=Lus10018548 locus=Lus10018548.g ID=Lus10018548.BGIv1.0 annot-version=v1.0 ATGGCTTCCGGTTGTGGAAATGATTTGGTCACTTACGGCCAAATTTCTCAAGCAGCTAGAAGAAAAGCTCGTAAGAAAGCTCAAGCTGCATTGCTGGACT ACTTGCATTCAACTAGGAGCTTACAATTTCTCGACGCAGACAACATAAGCAAGAACTCACCTCAGTTCCTGGAGAAAATACTTGCTCGGATCGATTACTC CGAGCAAGATATCGACAGATCTATCAGACGGTTCCTGCGGTATCACCCTGTGAATGAATTCGAGCCGTTCTTCGAGAGTTTGGGTTTGAATCCAGATGAC TACCCCTGCATTCTTCCTGAACACATGATGTTTCTGAGCGATGATAGCTTGCTCCTTGAGAATTATCATGTCTTGTGTGAATATGGGATACCTAGAGATA AGATTGGGAAGCTTTTCATCCGAGTTCCTGAGATTTTTCGGCTTGATCATGGAGTCTTGGCATCTAAACTTAAAGCATGGGAATGTGCAGGAATCAGCAG GTATTTTATGGATAAGGTAATAGCTTCTAGCCCTCGTGTTTTGATTGGAAATGCTCATGTTGACTTTATTAGTGTGTTGACCATTCTCGGAAAGGGCGGT CTTTCGTTATCTTGTGTCGAAGAACATCTACCGGAGAATATAGATTGCACTTGGAGCCAGATTCTATCACTTGTCAATTTGTTGCTGAAGCATGGTTTAT GTGAAGAGCAATTATGCTCTCGGATAGATATTTTATTCGAGGAGCAGAAAATACTGTCGGTTATCGTGTTCTTGACGAAATTTGGCACCCCATTGCATCA AGCTTGTGCAGTCATTTTCGAGAATCGAGGAATTGAGATTGGGAAGTTTCTGTCTAGTATGAGACAGTGCTTTGTGTTCTTCAATGAGATTGACATGGAA CCGTTCGAGATTGGGAAGATTATACGTTCTCGCCCGTTACTATTAGGTTCATGTACGTTGAAGAAAACCAGCACCTTGTTATCTCGTCTGAAATCTGGAA AGCTGAGGCTTTGTGAAGCGATTCAGAAGGACCCTTTTCAGTTGAGGAATTGGTCGAAGGAGGTTATCGAAATGAAGATTCGTTTCGTTGTGAATGATTT GGGGTATCCCGTGTCGTGCTTGGTTGGTTATCCGAAGTTTTTGGTCCGTGCAGAGAAGTTTGTGAAGGTTAGGTTGTGTATGTATAATTGGCTTAGAGAT CAAGGAGTCGTTGATCGAATTCTGGCTTTAAGTACTGTTCTTAATTCGTCCGAGAGATTGTTTGTTAAGCGGTATGTGAACATTCATCCCAGAGGGCCAG AAGTGTGGCAGGAACTGAAGACGGAAATCTATGGTGGCTGA
AA sequence Show only first row Show all	>Lus10018548 pacid=23180416 polypeptide=Lus10018548 locus=Lus10018548.g ID=Lus10018548.BGIv1.0 annot-version=v1.0 MASGCGNDLVTYGQISQAARRKARKKAQAALLDYLHSTRSLQFLDADNISKNSPQFLEKILARIDYSEQDIDRSIRRFLRYHPVNEFEPFFESLGLNPDD YPCILPEHMMFLSDDSLLLENYHVLCEYGIPRDKIGKLFIRVPEIFRLDHGVLASKLKAWECAGISRYFMDKVIASSPRVLIGNAHVDFISVLTILGKGG LSLSCVEEHLPENIDCTWSQILSLVNLLLKHGLCEEQLCSRIDILFEEQKILSVIVFLTKFGTPLHQACAVIFENRGIEIGKFLSSMRQCFVFFNEIDME PFEIGKIIRSRPLLLGSCTLKKTSTLLSRLKSGKLRLCEAIQKDPFQLRNWSKEVIEMKIRFVVNDLGYPVSCLVGYPKFLVRAEKFVKVRLCMYNWLRD QGVVDRILALSTVLNSSERLFVKRYVNIHPRGPEVWQELKTEIYGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06810			Mitochondrial transcription te...		Lus10018548 [exp]	0	1
AT5G64320			Pentatricopeptide repeat (PPR)...		Lus10039056 [exp]	1.7	0.7660
AT5G10710			unknown protein		Lus10026943 [exp]	3.9	0.6977
AT2G34930			disease resistance family prot...		Lus10016337 [exp]	4.2	0.7372
AT3G55590			Glucose-1-phosphate adenylyltr...		Lus10014608 [exp]	13.9	0.7195
AT5G65560			Pentatricopeptide repeat (PPR)...		Lus10042529 [exp]	15.2	0.6655
					Lus10017807 [exp]	21.9	0.6853
AT1G02100		SBI1	SUPPRESSOR OF BRI1, Leucine ca...		Lus10042909 [exp]	22.5	0.5528
AT1G62680			Pentatricopeptide repeat (PPR)...		Lus10042220 [exp]	25.2	0.7025
AT2G31290			Ubiquitin carboxyl-terminal hy...		Lus10034086 [exp]	29.7	0.6467
AT2G22530			Alkaline-phosphatase-like fami...		Lus10035939 [exp]	30.6	0.6346

Compare expression of checked genes

Lus10018548 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.