Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36290 414 / 7e-145 alpha/beta-Hydrolases superfamily protein (.1) AT3G48410 398 / 3e-138 alpha/beta-Hydrolases superfamily protein (.1) AT1G74300 389 / 2e-135 alpha/beta-Hydrolases superfamily protein (.1) AT1G74290 377 / 4e-130 alpha/beta-Hydrolases superfamily protein (.1) AT1G74280 372 / 3e-128 alpha/beta-Hydrolases superfamily protein (.1) AT3G54240 366 / 2e-126 alpha/beta-Hydrolases superfamily protein (.1) AT5G22460 315 / 1e-106 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G44510 288 / 7e-96 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G03240 284 / 2e-94 alpha/beta-Hydrolases superfamily protein (.1) AT3G03230 277 / 1e-91 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039775 [exp] 664 / 0 AT2G36290 425 / 3e-149 alpha/beta-Hydrolases superfamily protein (.1) Lus10034148 [exp] 507 / 0 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10043437 [exp] 506 / 0 AT2G36290 429 / 5e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10008968 [exp] 502 / 1e-179 AT2G36290 442 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1) Lus10041666 [exp] 500 / 3e-177 AT2G36290 440 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10017051 [exp] 404 / 1e-140 AT3G48410 489 / 1e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10028860 [exp] 402 / 1e-140 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10034135 [exp] 391 / 3e-136 AT3G48410 396 / 9e-138 alpha/beta-Hydrolases superfamily protein (.1) Lus10043449 [exp] 390 / 5e-136 AT3G48410 395 / 2e-137 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G021400 [exp] 441 / 9e-156 AT2G36290 446 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G237700 [exp] 437 / 3e-154 AT2G36290 452 / 6e-160 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021000 [exp] 432 / 8e-152 AT2G36290 441 / 5e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021200 [exp] 430 / 9e-152 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G237800 [exp] 413 / 9e-145 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G164900 [exp] 349 / 1e-119 AT5G22460 374 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G203700 [exp] 329 / 8e-112 AT5G22460 434 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G164600 [exp] 313 / 7e-106 AT3G44510 440 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G131300 [exp] 151 / 3e-41 AT5G02970 658 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G086200 [exp] 143 / 3e-38 AT5G02970 653 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10018549 pacid=23180426 polypeptide=Lus10018549 locus=Lus10018549.g ID=Lus10018549.BGIv1.0 annot-version=v1.0 ATGGAAGAAGCCAAAATTGTTGCGGCACCGCTGATCGGAATCCTTGCATGGGCGGCGTACAAGTCCCTCCGAGCGCCGCCACCGAAGATTCCGGGAACTC CGGGAGGACCTCCGGTGACCGCATCCCGAATGAAGCTCCGGGACGGCAGACACCTCGCTTACCAGGAAAACGGCGTACCAAAAGAAACCGCCAAATTCAA GATTGTCTTCGTTCACGGATTCACCTCTAACCGCCTCGACCCGATGATCGTCACCAATCTCTCTCCGGAAGCTGTGAAAGAGCTTGGAGTGTATGTGGTG ACATTCGACCGCCCGGGTTACGGGGAGAGCGACCCGGATCCGACCCGGACGCCGAAGAGCTTGGCTCTGGACATTGAAGAGCTAGCGGATTATCTCGGGC TCGGATCGAAATTCTACGTGGTGGGTAAATCCATGGGCGGTCAGGTTCTTTGGGGTTGCCTGAAGTACATACCTCACAGGCTGGCAGGAGCGGCGTTAGT GGCGCCGGTGATCAATTACTGGTGGCAGAGCTTCCCCAAGGAGCTAGCAAAGGAAGCTTACAATCAGCAGCTTCCTCAGGATCAATGGGCGCTGAGAATC GCCCATTACGCACCCTGGCTGACGTACTGGTGGAACACGCAGAAGATTTTCCCTTCGTCGGCGGTGATCGCGCGGCGGCCGGAGACCCTGTCGGCGCAGG ATAAGGAGCTGATAGCCAAGCAGGGCGGCGAAGGGCGGTATCTTAAGGAAGTGGCGACTCAGCAAGGGGAGCATGAGTCCTTACACAGGGACATGCGGGT CGGGTTTGGGAAGTGGGAGTTCGACCCGATGCAGATGGAGAATCCGTTTCCCGGCAATGGAGGGTGTAGGGTGCATCTGTGGCAAGGGGATGAGGATAAG AAAGTTCCGGTGCAGTTGCAGCGGTTCATTGTGAAGAAGCTGACGTGGATTAAGTACCATGAGTTGCCCGGTGCGGGACATGCGTTGCATTTTGTTCCCG GGATGATTGAAGGCGTTCTTCGGGCTCTGTTGGTCGGAGAAGATAAGTAG
AA sequence Show only first row Show all	>Lus10018549 pacid=23180426 polypeptide=Lus10018549 locus=Lus10018549.g ID=Lus10018549.BGIv1.0 annot-version=v1.0 MEEAKIVAAPLIGILAWAAYKSLRAPPPKIPGTPGGPPVTASRMKLRDGRHLAYQENGVPKETAKFKIVFVHGFTSNRLDPMIVTNLSPEAVKELGVYVV TFDRPGYGESDPDPTRTPKSLALDIEELADYLGLGSKFYVVGKSMGGQVLWGCLKYIPHRLAGAALVAPVINYWWQSFPKELAKEAYNQQLPQDQWALRI AHYAPWLTYWWNTQKIFPSSAVIARRPETLSAQDKELIAKQGGEGRYLKEVATQQGEHESLHRDMRVGFGKWEFDPMQMENPFPGNGGCRVHLWQGDEDK KVPVQLQRFIVKKLTWIKYHELPGAGHALHFVPGMIEGVLRALLVGEDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10018549 [exp]	0	1
AT2G39010		PIP2E, PIP2;6	PLASMA MEMBRANE INTRINSIC PROT...		Lus10021475 [exp]	5.0	0.8104
AT3G09920		PIP5K9	phosphatidyl inositol monophos...		Lus10014408 [exp]	5.5	0.7786
AT4G11280		ATACS6, ACS6	1-aminocyclopropane-1-carboxyl...		Lus10028760 [exp]	7.0	0.7664
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Lus10022577 [exp]	8.1	0.7938
AT3G06860		ATMFP2, ATMPF2,...	multifunctional protein 2 (.1)		Lus10037495 [exp]	10.2	0.7467
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Lus10033105 [exp]	11.8	0.7701
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Lus10003611 [exp]	15.9	0.7721
AT1G13970			Protein of unknown function (D...		Lus10026633 [exp]	16.2	0.7664
AT2G22680		WAVH1	WAV3 homolog 1, Zinc finger (C...		Lus10003485 [exp]	16.2	0.7525
AT5G18930		BUD2, SAMDC4	BUSHY AND DWARF 2, Adenosylmet...		Lus10021951 [exp]	17.2	0.7142

Compare expression of checked genes

Lus10018549 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.