Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039778 [exp] 384 / 1e-137 ND / Lus10039776 [exp] 225 / 9e-75 ND / Lus10039781 [exp] 118 / 3e-33 ND / Lus10018552 [exp] 99 / 1e-25 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G108500 [exp] 63 / 3e-12 ND / Potri.019G108700 [exp] 57 / 4e-10 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018550 pacid=23180434 polypeptide=Lus10018550 locus=Lus10018550.g ID=Lus10018550.BGIv1.0 annot-version=v1.0 ATGGAGAGATCGAGGACCAAATCCGCTTCCGAATCAGCTCACCGGAATTCCTTCGCCGAGTACGCCCTTTTCAAATCCACCGGCTTCCCTTCTTCTTCCG TTTCCAACACCCGCATCCACCGCCATCCCGACGACTGCTTACTCGACATCGACGACGAACCTTCACCAACTTCTCCCACCACCTTCGCTCCGTCGCTATC AATCCCCGTCAGCCGCCACACCCGGCACATCGGACGACCGTCGACTGGACACTCCCCAATCGGCTCCCCACAGTCAACTTCCGCTTTCTTCTCTGAGTTG AGCTGCCACCTGGACCTAGTGGCGGCGGCGCGTAGGGAGCACGAATCATGCTCCACGGCGGAGGAGAAGAGAGAGTTCAAGTCACGGTGGGTGCCGATCT TGCTGAACAGGCTGAAGGATCTGTCGGAGATGGAGGCGAAGAGTACGGTTGGGGTGGAGATCGCCGACACGGTGGATTTCTTGAAGACGCTGTACCCGTC GGAGTCTGTTTGTAAGGAGATCGGAGAGATCAGCGACAATAGTCGGCAAGGGGTGATTAAGCTGCAAGAAGGGTTGTTGTTGGTTGACAAGGCGAAGGAG CAGCTCCGATCTGCTCTCCACAGGAAACTCTTCTCTCTTGAATGA
AA sequence Show only first row Show all	>Lus10018550 pacid=23180434 polypeptide=Lus10018550 locus=Lus10018550.g ID=Lus10018550.BGIv1.0 annot-version=v1.0 MERSRTKSASESAHRNSFAEYALFKSTGFPSSSVSNTRIHRHPDDCLLDIDDEPSPTSPTTFAPSLSIPVSRHTRHIGRPSTGHSPIGSPQSTSAFFSEL SCHLDLVAAARREHESCSTAEEKREFKSRWVPILLNRLKDLSEMEAKSTVGVEIADTVDFLKTLYPSESVCKEIGEISDNSRQGVIKLQEGLLLVDKAKE QLRSALHRKLFSLE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10018550 [exp]	0	1
					Lus10039779 [exp]	1.0	0.8524
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Lus10029747 [exp]	4.9	0.8285
AT1G77420			alpha/beta-Hydrolases superfam...		Lus10041441 [exp]	5.3	0.8199
AT4G21865			unknown protein		Lus10023724 [exp]	5.5	0.8413
AT1G01550		BPS1	BYPASS 1, Protein of unknown f...		Lus10005326 [exp]	5.7	0.8235
AT2G23320	WRKY	WRKY15	WRKY DNA-binding protein 15 (....		Lus10006261 [exp]	11.7	0.8207
AT2G01850		ATXTH27, EXGT-A...	XYLOGLUCAN ENDOTRANSGLUCOSYLAS...		Lus10013240 [exp]	12.2	0.8112
					Lus10026392 [exp]	15.9	0.7695
AT5G51060		ATRBOHC, RHD2	ROOT HAIR DEFECTIVE 2, A. THAL...		Lus10022434 [exp]	16.7	0.7973
AT2G31510		ATARI7, ARI7	ARABIDOPSIS ARIADNE 7, ARIADNE...		Lus10027027 [exp]	18.2	0.8230

Compare expression of checked genes

Lus10018550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.