Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039779 [exp] 254 / 2e-84 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018551 pacid=23180489 polypeptide=Lus10018551 locus=Lus10018551.g ID=Lus10018551.BGIv1.0 annot-version=v1.0 ATGCAAGCTTTTCGACGATACCTACAACAATCGAATATTCCCTGTCTTCCCCGATCTTATCTAAACCAATCGAAAGTCGTCGCCGTCGTCGTCGGCTGCC GGAGGTATGGTGATTCCGTCTCCTCTTTCCCTCCCTTGCGCGACGACCACCAGTCGTCAACGAATTTCGTCAATTCGTTCAGCCAGTTCAAACGGTGGCC CAGTCACCAACCGTCGCCGCCGGACCCGGACCATCCCCTGCACAAATCGAACTCCGCCCCGGTTTTCCACGAGAACCAGCTCGATGAGCGGCGATCGTAC CGGTCAGCAGCGGGAGATCTGAATGAGATTCGGATTTCCGACGCCGACAAACTCGCTGCTGCTAATTTGGGATACACCAATAGCTTCACGAAAGATCGGA TGCTGAAAATGGGGGCTCTCTCTTCGCCATCGCCGTCCCCGTCTCCTTCCACTTCTCCGCCGCTGAATCCCTTCCGGACAGTATCGGATTCTTCTTCTTC ATCATCGGAAGTGACGACGCCGAAGTCAAAGACGGCGACTTCGCACGTGGTGATTGGAGGTATTACTTGCCCGATGGTTCGAAAGCTCTCCCTGCTGCGG CACCGGAGCACCAGCTTGAAGGAGAAGGTTAGTTTCATCAAGACCTGA
AA sequence Show only first row Show all	>Lus10018551 pacid=23180489 polypeptide=Lus10018551 locus=Lus10018551.g ID=Lus10018551.BGIv1.0 annot-version=v1.0 MQAFRRYLQQSNIPCLPRSYLNQSKVVAVVVGCRRYGDSVSSFPPLRDDHQSSTNFVNSFSQFKRWPSHQPSPPDPDHPLHKSNSAPVFHENQLDERRSY RSAAGDLNEIRISDADKLAAANLGYTNSFTKDRMLKMGALSSPSPSPSPSTSPPLNPFRTVSDSSSSSSEVTTPKSKTATSHVVIGGITCPMVRKLSLLR HRSTSLKEKVSFIKT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10018551 [exp]	0	1
AT2G23320	WRKY	WRKY15	WRKY DNA-binding protein 15 (....		Lus10006261 [exp]	1.4	0.8664
					Lus10039779 [exp]	2.0	0.8497
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10030481 [exp]	3.5	0.8331
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10012832 [exp]	10.2	0.7715
					Lus10003592 [exp]	13.0	0.7620
AT2G23320	WRKY	WRKY15	WRKY DNA-binding protein 15 (....		Lus10041600 [exp]	15.8	0.7645
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Lus10041487 [exp]	17.1	0.7224
AT4G25030			unknown protein		Lus10033276 [exp]	19.1	0.7641
					Lus10024821 [exp]	19.2	0.7795
AT5G03230			Protein of unknown function, D...		Lus10019936 [exp]	20.6	0.7083

Compare expression of checked genes

Lus10018551 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.