Plant FIBer expression Database

Lus10018552 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039781
[exp]
292 / 1e-101 ND /
Lus10039778
[exp]
108 / 3e-29 ND /
Lus10018550
[exp]
103 / 2e-27 ND /
Lus10039776
[exp]
82 / 5e-19 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G108500
[exp]
52 / 3e-08 ND /
Potri.019G108700
[exp]
45 / 9e-06 ND /
PFAM info
Representative CDS sequence
>Lus10018552 pacid=23180424 polypeptide=Lus10018552 locus=Lus10018552.g ID=Lus10018552.BGIv1.0 annot-version=v1.0
ATGGCTCAAATAAGCTCAGATCCTCCGCCACCAGACAAATTTGAAAACTCCCAACAATCTGATTTCCCAATGGACAGAAAATCCAAAATACACAAATCCA
CCTCCGCCGCCGATCTCACTCCGGCCAACCGCAACTCCTTCGCCGACTACGCTCTAGCCAAATCAGCAGCAGCCCACCTTCAAACATTCCCTCCTCCCGT
AGACGGCCTATCCGACATCGACGGCGAACCCGATTTCATCCTCCCGTCCAGTTCCACAGCTCTTCTGCATCCGCCCATTACTAAGCCAAAAGCTCCGTGC
TTTTCATCGGATTCCAGGCGTCTGGATTTAACAGCTGCAAGGAGGGAGTACGAGAAAAGAACAGAGTCCCAAAAGGCAGAGCTCAAGGCCGTACTTAAAC
GCGCCGTTTTGAGCCGGTTGAAGGAGTTGCCAGAGATGGAAGCGAACAGCAAAGTAGCGATCGAGATAGCCGAGGCTGCCGATTTCTTGAAGGCTCTGTA
CGGCTCCGGTCCGGCGCTGATGGAAATAAGCGAGAAGAGCCGGGAAGGAGTCATGCGGTTGCAAGAAGGTCAGCTGCTTGTTAAGAAATCGCAGGACCTG
CTGCGATCTCTACTTCGCCATAGGCTTTTCTCCATTGATTAA
AA sequence
>Lus10018552 pacid=23180424 polypeptide=Lus10018552 locus=Lus10018552.g ID=Lus10018552.BGIv1.0 annot-version=v1.0
MAQISSDPPPPDKFENSQQSDFPMDRKSKIHKSTSAADLTPANRNSFADYALAKSAAAHLQTFPPPVDGLSDIDGEPDFILPSSSTALLHPPITKPKAPC
FSSDSRRLDLTAARREYEKRTESQKAELKAVLKRAVLSRLKELPEMEANSKVAIEIAEAADFLKALYGSGPALMEISEKSREGVMRLQEGQLLVKKSQDL
LRSLLRHRLFSID

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10018552
[exp]
0 1
AT2G26530 AR781 Protein of unknown function (D... Lus10032881
[exp]
1.7 0.9431
AT3G07200 RING/U-box superfamily protein... Lus10022569
[exp]
2.8 0.9306
AT3G20600 NDR1 non race-specific disease resi... Lus10043067
[exp]
3.0 0.9203
AT1G71690 Protein of unknown function (D... Lus10003512
[exp]
5.2 0.9012
AT4G27280 Calcium-binding EF-hand family... Lus10031588
[exp]
8.0 0.9105
AT3G57120 Protein kinase superfamily pro... Lus10027054
[exp]
8.5 0.9021
AT1G72470 ATEXO70D1 exocyst subunit exo70 family p... Lus10008126
[exp]
10.0 0.8751
AT4G35600 Kin4, CX32, CST... kinase 4, CONNEXIN 32, CAST AW... Lus10008015
[exp]
10.9 0.9027
AT5G48290 Heavy metal transport/detoxifi... Lus10016061
[exp]
11.0 0.9027
AT4G27890 HSP20-like chaperones superfam... Lus10027048
[exp]
11.1 0.8590

Lus10018552 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.