Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26690 770 / 0 Major facilitator superfamily protein (.1) AT1G12110 532 / 0 CHL1-1, CHL1, B-1, ATNRT1, NRT1.1 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) AT3G21670 446 / 2e-150 Major facilitator superfamily protein (.1) AT2G02040 395 / 1e-130 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT3G54140 394 / 2e-130 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 390 / 5e-129 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT1G62200 374 / 1e-122 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT1G59740 357 / 4e-116 Major facilitator superfamily protein (.1) AT1G68570 356 / 2e-115 Major facilitator superfamily protein (.1) AT2G02020 338 / 6e-109 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039782 [exp] 1024 / 0 AT2G26690 851 / 0.0 Major facilitator superfamily protein (.1) Lus10030081 [exp] 797 / 0 AT2G26690 788 / 0.0 Major facilitator superfamily protein (.1) Lus10032252 [exp] 565 / 0 AT1G12110 771 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) Lus10024614 [exp] 533 / 0 AT1G12110 737 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) Lus10030006 [exp] 468 / 2e-159 AT3G21670 800 / 0.0 Major facilitator superfamily protein (.1) Lus10035317 [exp] 456 / 1e-154 AT3G21670 801 / 0.0 Major facilitator superfamily protein (.1) Lus10035516 [exp] 417 / 1e-139 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10030947 [exp] 402 / 4e-133 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040099 [exp] 402 / 4e-133 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G111500 [exp] 545 / 0 AT1G12110 721 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) Potri.002G225500 [exp] 472 / 2e-160 AT3G21670 736 / 0.0 Major facilitator superfamily protein (.1) Potri.014G157500 [exp] 462 / 8e-157 AT3G21670 772 / 0.0 Major facilitator superfamily protein (.1) Potri.010G100200 [exp] 411 / 6e-137 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.011G120000 [exp] 403 / 7e-134 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.001G248600 [exp] 394 / 2e-130 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.005G233500 [exp] 390 / 3e-128 AT3G54140 498 / 6e-171 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.009G042400 [exp] 388 / 4e-128 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111800 [exp] 386 / 2e-127 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111900 [exp] 385 / 3e-127 AT3G54140 798 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10018553 pacid=23180484 polypeptide=Lus10018553 locus=Lus10018553.g ID=Lus10018553.BGIv1.0 annot-version=v1.0 ATGAGCTGGACTGTCTCGGACGCTGTAGACTACAAGGGCTTCCCTGCCGACAAGTCGAAAACCGGTGGTTGGGTGCCTGCTGCACTCATCCTAGGGATTG AGATATGTGAGAGGCTGTCAACAATGGGGATAGCAGTGAACCTTGTGACATATCTGATTGGAACAATGCACATGCCAAGTGCAGCATCTGCCAACGTTGT AACTGATTTCATGGGCACATCTTTCCTCTTGTGCTTGCTTGGTGGCTTCCTTGCTGATTCTTTCCTTGGACGATTCAAGACCATTGCAATCTTTTCTGTC ATCCAAGCTATTGGTACTGCAACTTTGGCAGTGGCAACAAAGCTGCCACAACTGAGGCCACCACCATGCCATGGGAACGGATCACAATGCATACAAGCAA GCGGATTCCAGATGGGGATCCTATACATGGCCCTGTACCTAATTTCTCTAGGGACCGGTGGCTTGAAATCTAGCGTCTCAGGGTTCGGAACGGACCAATT CGACGAGAAGGACGAGAAGGAGAAGTCCCAGATGGCCTACTTCTTCAACAGGTTCTTCTTCTTCATCAGCATGGGAACCCTCATGGCCGTGACCGTCCTG GTGTACATCCAGGATGAAGTCGGCCGTAGCTGGGCTTACGGCATCTGTTCCGCTTCGATGTTCATAGCCATCGGGATATTGCTCTCCGGAGTGAAGAAGT ACAGGTACAAGAAGAGCATGGGAAGTCCTATTGTTCAGATATTCCAAGTCATTGCAGCTGCCGTTAGTAAGAGGAAGCTGGCATTGCCTTATGATCTTGC CTTGTTGTATGAGAGTAATCCTCCTGGCTCAAGGATTCACCACACTAACCAGTTCCGGTTCTTGGACAAGGCAGCCATTGCTGTGGAAGCAGACTTTGAT CAGAACGGTGGCCGGCATGGCTTGGAACCGAACCCGTGGAAGCTATGCACGGTAACCCGGGTGGAAGAGGTGAAGATGATGGTGAGGTTGCTTCCCATAT GGGCCACAACCATCATATTCTGGACAACTTATGCACAGATGATCACGTTCTCAGTAGAGCAAGCTTCCACCATGTACAGAAACGTCGGGAGCTTCCAAAT TCCAGCAGGATCCCTAACGGTTTTCTTTGTGGCTGCTATCTTGATTACTCTCGCTGTTTATGACCGCTTTATCATGCCGTTCTGGAAGAAATGGAAAGGC AAACCAGGTTTCAGCAGCCTACAGAGGATAGCGATCGGGCTAGCTCTGTCAACAATGGGAATGGGAGTGGCCGCCCTAGTCGAGAAAAAGCGGCTTTCAG AGGCCGCGAAAGTCGCAACCACCTCGACCCCTACCGTCCTGCCACTATCGGTGTTCTTACTGATCCCGCAGTTCTTCCTGGTGGGTTCGGGGGAGGCATT CATCTACACAGGGCAGCTCGACTTCTTCATAACTCAATCACCAAAGGGGATGAAGACGATGAGCACAGGATTGTTCCTCACCACTCTCTCCCTCGGATTC TTCGTCAGCAGCTTCCTTGTGATGGTGGTGAAGAAAGTTACTACAACAGGAAATGGAAATGGAATTGGAAATCAAGGGTGGTTGGCTGATAATATTAACC ATGGAAGGCTGGATTGCTTTTACTGGTTGCTGGCTGTTCTTGGAGTGGTTAACTTTGTTGTGTTCTTGGTTTGTGCTGCTTGGTACAAGCCTAAGGAGGA TGGGGAGGAGAAGTCAAAATCATCCAACAATGGTGGGTTGGAGATTGAGATTGGGAATGAGAAGATCAATGGGGATGTTGTTGACAAGTGCTGA
AA sequence Show only first row Show all	>Lus10018553 pacid=23180484 polypeptide=Lus10018553 locus=Lus10018553.g ID=Lus10018553.BGIv1.0 annot-version=v1.0 MSWTVSDAVDYKGFPADKSKTGGWVPAALILGIEICERLSTMGIAVNLVTYLIGTMHMPSAASANVVTDFMGTSFLLCLLGGFLADSFLGRFKTIAIFSV IQAIGTATLAVATKLPQLRPPPCHGNGSQCIQASGFQMGILYMALYLISLGTGGLKSSVSGFGTDQFDEKDEKEKSQMAYFFNRFFFFISMGTLMAVTVL VYIQDEVGRSWAYGICSASMFIAIGILLSGVKKYRYKKSMGSPIVQIFQVIAAAVSKRKLALPYDLALLYESNPPGSRIHHTNQFRFLDKAAIAVEADFD QNGGRHGLEPNPWKLCTVTRVEEVKMMVRLLPIWATTIIFWTTYAQMITFSVEQASTMYRNVGSFQIPAGSLTVFFVAAILITLAVYDRFIMPFWKKWKG KPGFSSLQRIAIGLALSTMGMGVAALVEKKRLSEAAKVATTSTPTVLPLSVFLLIPQFFLVGSGEAFIYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGF FVSSFLVMVVKKVTTTGNGNGIGNQGWLADNINHGRLDCFYWLLAVLGVVNFVVFLVCAAWYKPKEDGEEKSKSSNNGGLEIEIGNEKINGDVVDKC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26690			Major facilitator superfamily ...		Lus10018553 [exp]	0	1
AT2G26690			Major facilitator superfamily ...		Lus10039782 [exp]	1.0	0.9682
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Lus10036088 [exp]	1.7	0.9079
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10007948 [exp]	2.0	0.9300
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Lus10037520 [exp]	2.8	0.9071
AT2G36330			Uncharacterised protein family...		Lus10032147 [exp]	3.7	0.8984
AT1G08960		CCX5, AtCXX5, A...	cation calcium exchanger 5, A...		Lus10004469 [exp]	3.9	0.9069
AT1G06475			unknown protein		Lus10015269 [exp]	4.5	0.8864
AT1G68570			Major facilitator superfamily ...		Lus10034305 [exp]	6.0	0.8877
AT4G29800		PLP8, PLAIVD ,P...	PATATIN-like protein 8 (.1.2)		Lus10036213 [exp]	6.9	0.8914
AT3G51790		ATG1	transmembrane protein G1P-rela...		Lus10031266 [exp]	6.9	0.8728

Compare expression of checked genes

Lus10018553 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.