Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20810 857 / 0 GAUT10, LGT4 galacturonosyltransferase 10 (.1) AT1G18580 591 / 0 GAUT11 galacturonosyltransferase 11 (.1) AT5G47780 488 / 2e-167 GAUT4 galacturonosyltransferase 4 (.1) AT3G61130 481 / 8e-164 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT4G38270 461 / 3e-156 GAUT3 galacturonosyltransferase 3 (.1.2) AT3G25140 435 / 2e-147 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G02350 390 / 5e-130 GAUT9 galacturonosyltransferase 9 (.1) AT2G46480 370 / 9e-123 GAUT2, LGT2 galacturonosyltransferase 2 (.1) AT3G01040 346 / 4e-113 GAUT13 galacturonosyltransferase 13 (.1.2) AT5G15470 335 / 4e-109 GAUT14 galacturonosyltransferase 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039784 [exp] 599 / 0 AT2G20810 459 / 1e-160 galacturonosyltransferase 10 (.1) Lus10007979 [exp] 598 / 0 AT1G18580 845 / 0.0 galacturonosyltransferase 11 (.1) Lus10013506 [exp] 597 / 0 AT1G18580 843 / 0.0 galacturonosyltransferase 11 (.1) Lus10038739 [exp] 484 / 3e-165 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10041389 [exp] 477 / 5e-163 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1) Lus10009311 [exp] 475 / 1e-161 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1) Lus10036540 [exp] 478 / 2e-161 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1) Lus10026546 [exp] 473 / 5e-156 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10011834 [exp] 427 / 2e-144 AT3G25140 949 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G108900 [exp] 929 / 0 AT2G20810 838 / 0.0 galacturonosyltransferase 10 (.1) Potri.013G146200 [exp] 886 / 0 AT2G20810 820 / 0.0 galacturonosyltransferase 10 (.1) Potri.015G060800 [exp] 614 / 0 AT1G18580 850 / 0.0 galacturonosyltransferase 11 (.1) Potri.012G064500 [exp] 587 / 0 AT1G18580 846 / 0.0 galacturonosyltransferase 11 (.1) Potri.016G001700 [exp] 494 / 4e-169 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.002G151400 [exp] 473 / 8e-161 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1) Potri.014G073800 [exp] 472 / 4e-160 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1) Potri.004G206000 [exp] 471 / 6e-160 AT4G38270 881 / 0.0 galacturonosyltransferase 3 (.1.2) Potri.006G001100 [exp] 464 / 2e-158 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.002G246500 [exp] 433 / 9e-147 AT3G25140 912 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10018554 pacid=23180387 polypeptide=Lus10018554 locus=Lus10018554.g ID=Lus10018554.BGIv1.0 annot-version=v1.0 ATGAGGCGGAGGCCGGTGGATTTCCGACGGCCGGTCAGGAGGAGATTGTCGAATGTGGTGTGGTGGACGCTGTGTGGGATAGTGGTGCTGCTGTTCATAG TGATTTTTAGCAAGGAGAGCCAGATTGAATCCAGGCACGCCATCAGTAAGCAGAATGCTGCTAGACACGAAAAATTCATGGAAGGACTAAACATCACGGA CGAAATGCTGAGTCCCAATTCCGTCACTAGGCAGCTCAGCGACCAAATATCGCTCGCCAAAGCATTCGTGGTGATTGCAAAAGAAAACAACAACCTCCAG TTTGCTTGGGAATTAAGCGCCCAAATCCGCAACTCACAAGTTCTTCTCTCAGGCGCTGCAACAAGGCGAATCCCCTTAACCACAAGAGAATCCGAGGCTG CAATTCGTGACATGGCACTTCTTCTCTTCCAGGGACAGCAACTCCATTATGATAGCGCTACTATGATCATGAAACTGAAAGCCAAAATTCAAGGTCTGGA AGAACAGATGAGTTCCGTGAGCGAGAAAAGCTCCAAGTACGGACAAATTGCTGCCGAGGAAGTCCCGAAAGGTTTGTACTGTATTGGTATTCGGTTGACT ACAGTATGGTTCAGAAACTTGAGCTTGCAGAGGAATATCGATGAGAGAATGCAGATCGAAGCGAAACTTCAAGACAACAGTTTAAGTCATTTCTGCATCT TCTCTGACAACATTGTTGCTACATCGGTGGTAATCAACTCGACAGCTATTAATTCGAAGAATCCGGATAGAGTAGTCTTCCATATCGTAACGGATGAGAT CAACTACCCTGCGATGAGAGCCTGGTTTGGCACGACCGAATTTCGAGGAGTGACTGTTGAAGTTCAGAAATTTGACGACTTCAAATGGCTGAATGCTTCG TATGTTCCGGTCCTGAAGCAGCTGCAGGATGCTGAAACTCAAAGCTACTACTTCTCGGGACACAACGATGAAGACCGGACTCCAATCAAGTTCCGGAATC CGAAATACTTATCCATGCTGAATCACCTCAGATTCTACATCCCGGAGGTTTTTCCAGCGCTGAAGAAGATTGTATTCCTTGACGACGATGTGGTGGTTCA GAAGGATCTATCGGTGCTATTTACTATCGATCTGAACGGAAATGTCAATGGCGCTGTGGAGACTTGTATGGAGACTTTCCACAGGTACCATAAGTATCTG AACTACTCCCACCCTCTGATTCGTGAGCATTTCGATCCAGACGCCTGTGGATGGGCGTTCGGGATGAACGTGTTTGATTTGGTCGAATGGAGGAAAAGGA ACGTTACTTCGATCTACCACTACTGGCAGGAAAAGAACATGGACCGGACTCTGTGGAAGCTCGGAACTTTACCGCCAGGGCTTCTCACGTTCTACGGGTT GACAGAGCCGTTGGAACCCTCGTGGCACGTGCTGGGACTCGGGTACACAAATGTCGATCCTCGAGTTATTGAGAAGGGAGCGGTTTTGCACTTTAATGGG AACTCGAAGCCATGGCTGAAGATTGGGATGGAAAAGTATAAGCCTTTGTGGGAGAAGTATGTAGATTACTCTCACCCTTTGTTGCAGGAGTGCAACTTCC ATTGA
AA sequence Show only first row Show all	>Lus10018554 pacid=23180387 polypeptide=Lus10018554 locus=Lus10018554.g ID=Lus10018554.BGIv1.0 annot-version=v1.0 MRRRPVDFRRPVRRRLSNVVWWTLCGIVVLLFIVIFSKESQIESRHAISKQNAARHEKFMEGLNITDEMLSPNSVTRQLSDQISLAKAFVVIAKENNNLQ FAWELSAQIRNSQVLLSGAATRRIPLTTRESEAAIRDMALLLFQGQQLHYDSATMIMKLKAKIQGLEEQMSSVSEKSSKYGQIAAEEVPKGLYCIGIRLT TVWFRNLSLQRNIDERMQIEAKLQDNSLSHFCIFSDNIVATSVVINSTAINSKNPDRVVFHIVTDEINYPAMRAWFGTTEFRGVTVEVQKFDDFKWLNAS YVPVLKQLQDAETQSYYFSGHNDEDRTPIKFRNPKYLSMLNHLRFYIPEVFPALKKIVFLDDDVVVQKDLSVLFTIDLNGNVNGAVETCMETFHRYHKYL NYSHPLIREHFDPDACGWAFGMNVFDLVEWRKRNVTSIYHYWQEKNMDRTLWKLGTLPPGLLTFYGLTEPLEPSWHVLGLGYTNVDPRVIEKGAVLHFNG NSKPWLKIGMEKYKPLWEKYVDYSHPLLQECNFH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20810		GAUT10, LGT4	galacturonosyltransferase 10 (...		Lus10018554 [exp]	0	1
AT1G69430			unknown protein		Lus10037135 [exp]	1.4	0.8953
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10000262 [exp]	2.4	0.8714
AT5G44370		PHT4;6	phosphate transporter 4;6 (.1)		Lus10013836 [exp]	8.5	0.8028
AT1G43690			ubiquitin interaction motif-co...		Lus10005002 [exp]	9.6	0.8616
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Lus10009539 [exp]	10.6	0.8501
AT2G32450			Calcium-binding tetratricopept...		Lus10033182 [exp]	12.0	0.8571
AT5G44370		PHT4;6	phosphate transporter 4;6 (.1)		Lus10026551 [exp]	13.0	0.8505
AT3G19870			unknown protein		Lus10030556 [exp]	13.4	0.8580
AT2G37250		ADK, ATPADK1	adenosine kinase (.1)		Lus10023476 [exp]	13.9	0.7839
AT3G12915			Ribosomal protein S5/Elongatio...		Lus10031779 [exp]	15.6	0.8430

Compare expression of checked genes

Lus10018554 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.