Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20815 218 / 3e-64 QWRF3 QWRF domain containing 3, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT2G24070 117 / 1e-27 QWRF4 QWRF domain containing 4, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT4G30710 117 / 2e-27 QWRF8 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT3G19570 107 / 4e-24 SCO3, QWRF1 SNOWY COTYLEDON 3, QWRF domain containing 1, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT1G49890 105 / 1e-23 QWRF2 QWRF domain containing 2, Family of unknown function (DUF566) (.1) AT4G25190 100 / 9e-23 QWRF7 QWRF domain containing 7, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT5G43160 97 / 3e-22 QWRF9 QWRF domain containing 9, Family of unknown function (DUF566) (.1) AT3G60000 87 / 4e-18 QWRF6 QWRF domain containing 6, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT2G44190 86 / 1e-17 EMB3116, EDE1, QWRF5 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039786 [exp] 915 / 0 AT2G20815 218 / 3e-64 QWRF domain containing 3, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10014636 [exp] 125 / 2e-30 AT1G49890 529 / 0.0 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Lus10033792 [exp] 122 / 5e-29 AT1G49890 587 / 0.0 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Lus10010780 [exp] 118 / 5e-28 AT4G30710 398 / 5e-132 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10010779 [exp] 118 / 6e-28 AT4G30710 355 / 3e-114 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10022176 [exp] 116 / 5e-27 AT4G30710 408 / 1e-134 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10038729 [exp] 110 / 2e-25 AT2G44190 261 / 2e-81 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Lus10018698 [exp] 110 / 3e-25 AT1G49890 346 / 4e-110 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Lus10039129 [exp] 104 / 2e-23 AT2G44190 268 / 6e-84 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G146100 [exp] 344 / 1e-110 AT2G20815 218 / 1e-63 QWRF domain containing 3, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.001G126000 [exp] 114 / 3e-27 AT4G25190 225 / 4e-70 QWRF domain containing 7, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.018G103800 [exp] 111 / 1e-25 AT4G30710 261 / 2e-78 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.006G181700 [exp] 110 / 3e-25 AT4G30710 274 / 2e-83 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.001G295800 [exp] 109 / 7e-25 AT1G49890 526 / 4e-180 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.009G089800 [exp] 108 / 1e-24 AT1G49890 516 / 4e-176 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.002G119500 [exp] 104 / 2e-23 AT1G49890 380 / 2e-123 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.014G017500 [exp] 103 / 6e-23 AT1G49890 282 / 8e-86 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.006G000400 [exp] 92 / 1e-19 AT2G44190 220 / 2e-66 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Potri.016G000300 [exp] 88 / 3e-18 AT2G44190 226 / 1e-68 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04484 [flax] [poplar] QWRF QWRF family
Representative CDS sequence Show only first row Show all	>Lus10018555 pacid=23180498 polypeptide=Lus10018555 locus=Lus10018555.g ID=Lus10018555.BGIv1.0 annot-version=v1.0 ATGAACGAGAAGCCGAGGAGATCGACCAAATCGAGAGAAGTCAGCTCCAGATTCCTCTTCCTCACTCCAGCTGCTTCCCCTTCTCGAGAATTCACCGTCA ACAATGGCGGCAGCAGCAAAAATGGAGCCCACCCGCCATCCCCTGTTTCTTCTCCTTCCCCTGTTTCGCATTCCCCTGTTCGAAGCATTAAACCTGCCGC CGCCGCCGCCGGCTGCGGCGGCCGTGTTAAGTCTCAGAACCTGTGGCCTTCCTCTGCTGTCCCTTCCAACGCAAAAACACTGGCGGATCACCTTGGGAGT AGTATAGGCAATAGCAAGAGATCGATAGATGCTGCAGCAGCGGTGCTGAGTAAGTGTGAGAGCGGGAGAATGAGTCAGATCCAGAAAGAGAATCACCGTC CGGCGGCGATCGGAGGGTCTTTCCGGCATATGGGCAAACTGGGTTTCCGAGGGAATAATAATAAACCTCCATTTTCCCCTCCTTCATCTTCGTCGACTTC TTCTTCTTCTTCTTACATCCCTGGGAGATTCTCCGTCGACGAGAATGCTCTGTACAAGCCGTCTCCCCTCGCCGTCGACATCGATGACTCAAAATTATCC GACGCGGTCGACCCGGAATTCGAATCCTTCGAGCTTTCCCCACCGAGCGACGAGAAACCAAACGGAAGAAAAAAATCAGGGTTCGAAGTTCCTTCCAGAT ACCTGAAGAACATCACGAAGACGATCCGGAATCCCGACCCGAAACCCCGACCCGATTCCCTCGACCGGTCGTCGTCGTGCTCGATCGAGGCTTCCCCGAA GAAGAAGAAATTCAACATCAAGGGAGCAATCAGAAGGGCCAATTCACTGACAGGACCAAATGGCGGCGGTGCCAATTCGCAATGGGCTCTGTCCCCCGGT CGGACCGGGTCGCCGCCGATGACTGTGGAGAACAAAGAACGGCCGATGTCGTTCTCGACGCACAGAGGAATGGAGAAATTGCTGAGCTTGGGGTTCGATT TCTTCAAGAGCAGTAGCAGCAAAAGGATTTCGTATGCACCTTCTTCAAATTCTTCATTGTCCAGCTCATCTTCTTCCAAGTCGCTGGGGGGTAATTCCGA CAATGTACATCAGCTGAGGATGGCTCATTGCCGGATGTTACAGTGGAGATACGCAAACGCCAGGGCTGAGTCTGTGAACCAGAGGATGAACAATCAAGCT GAGAGTGATATGGTGTCAGCTTGGAAAACGATTGTTAAGATGAGGCAATCTGTTCTAAGGAAGAAGCTGCAGGTTCAGAAGGAAAAGCTTGAGATGAAAC TTGCTTTCATCCTCCATTCTCAGCTCAAAGGTCTGGAGTCATGGGGAGGAATGGAAGGGCAACATGCATCAGCATTATCAGCCACACATGAATCCTTACA AGCTGTCGTTTGCAGAGTTCCATTGGTCCAGGGTGCTAGGGTGAATCAAGAGCTGGCATCTCTAGCATTCAGGCACGCTACAGACTTGACAGACTCCATC AGATCGTCCCTAACAGCATTCTCGCCACCGTCTGACAAGACTGCAGAGCTTGTTTCGGAACTGGCCGAAGTTGTTGCTCAGGAGAAGCTTCTCATCGAAG AGTTTCATGAGATTTACCGGACAGTATCTACTCTACAGGTTCAAGAAAGTGAGCTGAGGAGTGCCATAATGCAGCTGAATTCTTTGCAAGAAGTAAGGTG TTAG
AA sequence Show only first row Show all	>Lus10018555 pacid=23180498 polypeptide=Lus10018555 locus=Lus10018555.g ID=Lus10018555.BGIv1.0 annot-version=v1.0 MNEKPRRSTKSREVSSRFLFLTPAASPSREFTVNNGGSSKNGAHPPSPVSSPSPVSHSPVRSIKPAAAAAGCGGRVKSQNLWPSSAVPSNAKTLADHLGS SIGNSKRSIDAAAAVLSKCESGRMSQIQKENHRPAAIGGSFRHMGKLGFRGNNNKPPFSPPSSSSTSSSSSYIPGRFSVDENALYKPSPLAVDIDDSKLS DAVDPEFESFELSPPSDEKPNGRKKSGFEVPSRYLKNITKTIRNPDPKPRPDSLDRSSSCSIEASPKKKKFNIKGAIRRANSLTGPNGGGANSQWALSPG RTGSPPMTVENKERPMSFSTHRGMEKLLSLGFDFFKSSSSKRISYAPSSNSSLSSSSSSKSLGGNSDNVHQLRMAHCRMLQWRYANARAESVNQRMNNQA ESDMVSAWKTIVKMRQSVLRKKLQVQKEKLEMKLAFILHSQLKGLESWGGMEGQHASALSATHESLQAVVCRVPLVQGARVNQELASLAFRHATDLTDSI RSSLTAFSPPSDKTAELVSELAEVVAQEKLLIEEFHEIYRTVSTLQVQESELRSAIMQLNSLQEVRC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20815		QWRF3	QWRF domain containing 3, Fami...		Lus10018555 [exp]	0	1
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Lus10016720 [exp]	7.1	0.9602
AT3G11840		PUB24	plant U-box 24 (.1)		Lus10029395 [exp]	18.2	0.9469
AT3G26230		CYP71B24	"cytochrome P450, family 71, s...		Lus10019461 [exp]	19.4	0.9534
AT1G14550			Peroxidase superfamily protein...		Lus10009900 [exp]	20.9	0.9528
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10011346 [exp]	29.7	0.9523
AT1G23820		SPDS1	spermidine synthase 1 (.1.2)		Lus10039416 [exp]	32.0	0.9291
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10005858 [exp]	35.7	0.9508
AT4G23690			Disease resistance-responsive ...		Lus10024715 [exp]	36.1	0.9462
AT1G13340			Regulator of Vps4 activity in ...		Lus10033552 [exp]	36.1	0.9496
AT4G23690			Disease resistance-responsive ...		Lus10024714 [exp]	36.2	0.9445

Compare expression of checked genes

Lus10018555 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.