Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039787 [exp] 445 / 1e-156 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G109200 [exp] 158 / 3e-43 ND / Potri.013G145900 [exp] 153 / 1e-41 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018556 pacid=23180391 polypeptide=Lus10018556 locus=Lus10018556.g ID=Lus10018556.BGIv1.0 annot-version=v1.0 ATGGCGATCAAGGGGAACAACAGCAGCAGCGGCAGCAGCATTGGCGGCGGAAACAGGGGAAGGGCGTACGGAGTGATGCTGCTGGTAGCATTCGGTGCTG CTCTGTTGGGAGTTTTGGTGGTTCATAAGCTTAGAGAAAGGCGCATCTTCAACATCCTGGTTACTGAGAAAGAACAGCAGCTCTATTCTCTTCACCTTCT CTTACAGAAGGAAAGAGAAGAGAGCAATGAAATGAGGAAGAAGGCGGAGGAGACGAAAACCAAGTTGGAGACATTAAGGACTCAGAAGATGGAGCTTGAC CGAAAAGTTCTCGAGATGCAATCCACCGTCGACTCCTTGAAAGACGAAGGCAAGGCATTGGAGACCGCTGTCGAGGAGAAACAGAACGAGATCAAGTCGC TGAGGGATCAGGCATCAGACGGAGAGAAAGAGAAGAACGATTCTCGAGTTTTGGCTCTTGTGGAGAGTGTGAAGCAGAAGGAAGCCGAGATTCAGGAGCT GAAGCGTCGGCTTGAAGATCCTGTCAAGGTTTGGTCTGTGGGATCAGATGATCCTTCGAACGGTGTGAACTCAAACGGGACGGAGGTGGAAATTGCGGGG CAGAATGGTAATTCGACGAATGGTGATGGAGTGTCTGGCAAGTTACCTGAGGGGAAGGAGAATGGGAGAGGGACTGATAGGAGGAGGTTGTCAAGAGATA AGGTGTTGCCTGCGGAAGAAGTAAGCAACAAGGAGTTTCTTGCGAGGCAAGTAAACAACGTTACCAGCGTCGAAAAGGAGATCATCAATACTGCCGGAAC ACACGACGATTCTGTCGAGAGTAACGGGAAGAGGAAACATGTCCATTCTTCTAGAAAGGCTAGAGGCAAGAAATGGAGAATGCTTGCTAGAAAGAGATGG TTGGGGAACAACATGAGCCATGAAAATGCTGCTGCGCACAACCCTGCAGTTGATCAGGCTCGGTCCAGATCTGAAGGCACGGTGTTCGAATCCGAGAAGG GTGAGGAAGATGCTGATTTGATGTACCAGGAAGCGGAGTCTAATTCTGATGCATCGAGAAGTCAGAACACGTAA
AA sequence Show only first row Show all	>Lus10018556 pacid=23180391 polypeptide=Lus10018556 locus=Lus10018556.g ID=Lus10018556.BGIv1.0 annot-version=v1.0 MAIKGNNSSSGSSIGGGNRGRAYGVMLLVAFGAALLGVLVVHKLRERRIFNILVTEKEQQLYSLHLLLQKEREESNEMRKKAEETKTKLETLRTQKMELD RKVLEMQSTVDSLKDEGKALETAVEEKQNEIKSLRDQASDGEKEKNDSRVLALVESVKQKEAEIQELKRRLEDPVKVWSVGSDDPSNGVNSNGTEVEIAG QNGNSTNGDGVSGKLPEGKENGRGTDRRRLSRDKVLPAEEVSNKEFLARQVNNVTSVEKEIINTAGTHDDSVESNGKRKHVHSSRKARGKKWRMLARKRW LGNNMSHENAAAHNPAVDQARSRSEGTVFESEKGEEDADLMYQEAESNSDASRSQNT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10018556 [exp]	0	1
AT5G06730			Peroxidase superfamily protein...		Lus10008174 [exp]	1.4	0.9236
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10023560 [exp]	3.5	0.9193
AT5G48130			Phototropic-responsive NPH3 fa...		Lus10001164 [exp]	7.6	0.8982
AT2G37050			Leucine-rich repeat protein ki...		Lus10004275 [exp]	10.0	0.9342
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10000045 [exp]	12.2	0.8976
					Lus10029735 [exp]	13.1	0.8827
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10018378 [exp]	14.4	0.8909
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10040446 [exp]	14.5	0.9040
AT2G36780			UDP-Glycosyltransferase superf...		Lus10016268 [exp]	19.3	0.9029
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10034847 [exp]	20.0	0.9227

Compare expression of checked genes

Lus10018556 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.