Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20830 345 / 1e-119 transferases;folic acid binding (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039789 [exp] 558 / 0 AT2G20830 344 / 2e-119 transferases;folic acid binding (.1.2.3) Lus10018559 [exp] 296 / 5e-100 AT2G20830 288 / 6e-97 transferases;folic acid binding (.1.2.3) Lus10039790 [exp] 287 / 2e-96 AT2G20830 285 / 6e-96 transferases;folic acid binding (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G145700 [exp] 446 / 3e-159 AT2G20830 384 / 7e-135 transferases;folic acid binding (.1.2.3) Potri.019G104700 [exp] 307 / 2e-104 AT2G20830 288 / 5e-97 transferases;folic acid binding (.1.2.3) Potri.013G145600 [exp] 293 / 1e-98 AT2G20830 295 / 2e-99 transferases;folic acid binding (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07837 [flax] [poplar] FTCD_N Formiminotransferase domain, N-terminal subdomain
Representative CDS sequence Show only first row Show all	>Lus10018558 pacid=23180377 polypeptide=Lus10018558 locus=Lus10018558.g ID=Lus10018558.BGIv1.0 annot-version=v1.0 ATGCTGATGAAGCAGATGCTTGCTTGCTGCTGCAAGGTGTACATATCCGAAAGCCGAAACAAGGCAGCACTGGACTCGATCGAAAGAGCAGCAAAGTTGT TCCCCGAAACACCAATCGTCAACAAGTTCGAAGACGTGACATACAACAGAGTCGGATACACTCTTGTCGGAAGGTTGGCTCCGGACTCATCATCATCTTC AGATAGCTCCCAATTGAAGTCCTCTGTGTTTGCTATGGTTAAGGCTGCATTTGAAACAATCGATTTCGAGCACCATGCCGGTAGTCATCCTAGGCTCGGT GTCGTGGACCATATCTGTTTCCATCCACTAGCTCAAGCTTCTCTGGAACAAGCAGCTTCCGTTGCCATGTCCTTGGCAGTAAAAGTCGGTTCAGAACTCG AAGTACCGACATTTCTGTATGGAGCTGCCAGCTCCGAAGGGAAGAAGCTGGATGCAATCAGGAGAGAATTGGGATACTTCAAGCCGAGCTCCGGAAACCA ATGGGTTGGAAGCAGCTCGATTCAATCGGATTCCTTGCCTCTGAAGCCAGACGAAGGACCTCCACGAGCAAATCGAACAAAAGGCGTCCTCGTGATTGGA GCTACTAAGTGGGTCGATAACTACAACGTCCCCGTGCACTCGACTGACATGGCCGCCATTCGCAGGATTGCGAAGAAGGTAAGCACGAGGGGAGGCGGGC TGCCTTCTGTTCAGGCGATGGCACTCGCTCACGAGAACAATGTCATCGAGGTCGCTTGTAACTTGTTGGAACCGAGTGATGTCGGAGGAGACAGAGTTCA GCGAGAAGTCGAAACTCTCGGTGAGGAAGAAGAGATCGCTGTGGGGAAAGGGTACTACACTGACTTCCCTCAGGAGAAGATACTTGAGAAGTTTTGCAGC ATCAATGGCTAG
AA sequence Show only first row Show all	>Lus10018558 pacid=23180377 polypeptide=Lus10018558 locus=Lus10018558.g ID=Lus10018558.BGIv1.0 annot-version=v1.0 MLMKQMLACCCKVYISESRNKAALDSIERAAKLFPETPIVNKFEDVTYNRVGYTLVGRLAPDSSSSSDSSQLKSSVFAMVKAAFETIDFEHHAGSHPRLG VVDHICFHPLAQASLEQAASVAMSLAVKVGSELEVPTFLYGAASSEGKKLDAIRRELGYFKPSSGNQWVGSSSIQSDSLPLKPDEGPPRANRTKGVLVIG ATKWVDNYNVPVHSTDMAAIRRIAKKVSTRGGGLPSVQAMALAHENNVIEVACNLLEPSDVGGDRVQREVETLGEEEEIAVGKGYYTDFPQEKILEKFCS ING

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20830			transferases;folic acid bindin...		Lus10018558 [exp]	0	1
AT5G64840		ABCF5, ATGCN5	ATP-binding cassette F5, gener...		Lus10006804 [exp]	4.2	0.8839
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10029716 [exp]	5.3	0.8906
AT5G48330		RUG2	RCC1/UVR8/GEF-like 2, Regulato...		Lus10016075 [exp]	5.3	0.8616
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Lus10008039 [exp]	5.7	0.8261
AT1G66840		PMI2, WEB2	WEAK CHLOROPLAST MOVEMENT UNDE...		Lus10017614 [exp]	6.1	0.8923
AT2G23580		ATMES4, ABE4	ARABIDOPSIS THALIANA METHYL ES...		Lus10009205 [exp]	9.2	0.8656
AT1G44000			unknown protein		Lus10029738 [exp]	10.0	0.8718
AT5G17670			alpha/beta-Hydrolases superfam...		Lus10005666 [exp]	13.9	0.8761
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10037694 [exp]	16.3	0.8274
AT1G24490		ALB4, ARTEMIS	ARABIDOPSIS THALIANA ENVELOPE ...		Lus10006454 [exp]	23.9	0.7598

Compare expression of checked genes

Lus10018558 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.