Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20830 288 / 7e-97 transferases;folic acid binding (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039790 [exp] 595 / 0 AT2G20830 285 / 6e-96 transferases;folic acid binding (.1.2.3) Lus10039789 [exp] 303 / 9e-103 AT2G20830 344 / 2e-119 transferases;folic acid binding (.1.2.3) Lus10018558 [exp] 285 / 9e-96 AT2G20830 354 / 3e-123 transferases;folic acid binding (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G104700 [exp] 447 / 2e-159 AT2G20830 288 / 5e-97 transferases;folic acid binding (.1.2.3) Potri.013G145600 [exp] 434 / 4e-154 AT2G20830 295 / 2e-99 transferases;folic acid binding (.1.2.3) Potri.013G145700 [exp] 326 / 7e-112 AT2G20830 384 / 7e-135 transferases;folic acid binding (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07837 [flax] [poplar] FTCD_N Formiminotransferase domain, N-terminal subdomain
Representative CDS sequence Show only first row Show all	>Lus10018559 pacid=23180440 polypeptide=Lus10018559 locus=Lus10018559.g ID=Lus10018559.BGIv1.0 annot-version=v1.0 ATGGTGAAGAGTAGTACCAAATCCCTGCTGTGCTGCAAGCTCTTCATCTCCGAGTCCCGCAACTCCTCTATCCTGGACGCCATCGAGACCGCGGCCAGGC GGGACCCGGAGACAATGGTGGTCAGCAAGTTCCCCGACCGAGCTTACAACAGGATCCGCTACACTCTTGTGTCCTACGTCGTGCCGCTTGACAGCACCGG ATCAGAAATCTACAGCCCTCTCCGGCAGACGGTGCTGGCAATGGCGGAGGCAGCTTACGGAGCAATAAGGCTCGACCAGCATTCCGGTACTCATCCTCGG CTTGGCGTTGTCGACGACGTCGTTTTCCATCCCTTGGGTCGAGCGTCGCTCGATGAAGCTGCTTGCCTCTCCAAGTCTCTGGCTGCTGATTTCGCTGCCC TGTTCCAAGTGCCGGTGTTTCTATTTGGGGCCGCACACCCAACAAGAAAGGCCTTAGATACCATAAGGAGGGAACTGGGCTACTACAGGCCCAACTTCGC AGGCAACCAATGGGCCGGGTGGTCAATGCCCAAAACCTTATCCCTGATTCCCGACGAGGGCCCGACCCATGTTTCGCCGGCGAGAGGGATCGCGATGATC GGTGCGAGGCAATGGGTCGGGCTGTACAATGTTCCAATCATGAGCACCAATGTGGCCGCCGCCAGGAGAATTGCACGGATGGTCAGTGCTCGCGGCGGCG GACTGCCGACGGTGCAAACACTGGGCCTGGTCCACGGCGAGGACTCGACCGAGATAGCTTGCATGTTGTTGGAGCCCAATCAGATCGGTGCGGACCAGGT ACAGAACCGGGTCGAAACCTTAGCCGCACAACATGGGTTGGACGTTGAGAAAGGCTACTTCACTGATTTCTCACCCGAAATGGTTGTCGAGAGATACACA AAGTTGATCTCTGGGAACCAATGA
AA sequence Show only first row Show all	>Lus10018559 pacid=23180440 polypeptide=Lus10018559 locus=Lus10018559.g ID=Lus10018559.BGIv1.0 annot-version=v1.0 MVKSSTKSLLCCKLFISESRNSSILDAIETAARRDPETMVVSKFPDRAYNRIRYTLVSYVVPLDSTGSEIYSPLRQTVLAMAEAAYGAIRLDQHSGTHPR LGVVDDVVFHPLGRASLDEAACLSKSLAADFAALFQVPVFLFGAAHPTRKALDTIRRELGYYRPNFAGNQWAGWSMPKTLSLIPDEGPTHVSPARGIAMI GARQWVGLYNVPIMSTNVAAARRIARMVSARGGGLPTVQTLGLVHGEDSTEIACMLLEPNQIGADQVQNRVETLAAQHGLDVEKGYFTDFSPEMVVERYT KLISGNQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20830			transferases;folic acid bindin...		Lus10018559 [exp]	0	1
					Lus10027225 [exp]	3.2	0.8046
AT2G21070		FIO1	FIONA1, methyltransferases (.1...		Lus10025061 [exp]	4.9	0.7802
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10040963 [exp]	9.5	0.7513
AT1G16430			Surfeit locus protein 5 subuni...		Lus10040343 [exp]	15.5	0.7579
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10027617 [exp]	33.4	0.7120
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10040134 [exp]	39.3	0.7010
AT1G48160			signal recognition particle 19...		Lus10043056 [exp]	41.6	0.7311
AT2G07715			Nucleic acid-binding, OB-fold-...		Lus10037433 [exp]	60.2	0.7062
AT5G07910			Leucine-rich repeat (LRR) fami...		Lus10021635 [exp]	62.2	0.7325
AT4G10730			Protein kinase superfamily pro...		Lus10017326 [exp]	68.5	0.7370

Compare expression of checked genes

Lus10018559 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.