Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28190 269 / 8e-91 ULT ULT1 ULTRAPETALA1, Developmental regulator, ULTRAPETALA (.1.2) AT2G20825 245 / 1e-81 ULT ULT2 ULTRAPETALA 2, Developmental regulator, ULTRAPETALA (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039791 [exp] 370 / 2e-130 AT4G28190 359 / 8e-127 ULTRAPETALA1, Developmental regulator, ULTRAPETALA (.1.2) Lus10038586 [exp] 148 / 4e-43 AT2G20825 205 / 5e-66 ULTRAPETALA 2, Developmental regulator, ULTRAPETALA (.1) Lus10043127 [exp] 45 / 4e-05 AT5G46740 362 / 2e-115 ubiquitin-specific protease 21 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G145400 [exp] 310 / 5e-107 AT4G28190 380 / 2e-135 ULTRAPETALA1, Developmental regulator, ULTRAPETALA (.1.2) Potri.019G104500 [exp] 310 / 6e-107 AT4G28190 358 / 6e-127 ULTRAPETALA1, Developmental regulator, ULTRAPETALA (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018560 pacid=23180497 polypeptide=Lus10018560 locus=Lus10018560.g ID=Lus10018560.BGIv1.0 annot-version=v1.0 ATGGCGAACGGTTTAGTGGTTGGTGAAGAGGAGAGGAATAGTAATAGTGAGACGGCTGCGGCGGCGGCGATGGCGATGGTGATGGTGTTGTTTAGCGAGG AGGAGCTGAAGGAGATGAGCGGGGTGAAGAGCGGCGGAGATTACATAGAAGTGACGTGTGGGTGTACTAGCCATAGATATGGCGATGCTGTTGGTAGGCT TAGGGTTTTCGTCAATGGTCACCTTGAAATCACCTGTGAATGCACCCCTGGTTGCGATGAAGATAAGATGACTCCTGCTGCATTTGAGAAGCATTCTGGA AGAGAGACCGCTAGGAAATGGAAGAACAATGTCTGGGTCATTGTTAACGGCGTGAAGGTTCCATTGTCAAAGACAGTATTGCTCAAGTACTATAACCAGT CGCTAAAAGGCACCAATGGCGCGCAGCGACCTCAGAATGGACGGGTTTTCCATCGTGACGAGTTTGTTCGCTGCAGCAAGTGTGACAAGGACCGCAGGTT CCGTTTGCGTACCAAAGAGGAGTGTCGAGTTCACCATGATTCTGTGGCCAATGCAAATTGGAAATGTGCTGACATGCCATTTGACAAGCTTCTTTGCTCC ACAACATCGCATGGGATTCGGCATGACGGAGATCTCTGCCAGTATCGATCCTTCACCAAAGCTGGTGTTCTTCCTGTCAAAGAAGGTGAGGCCGCAGCAC TTCTTGAAGCTCTTCGATGGGTATCGGACCAGGGCCACCAGTGGTGCCGGCGGCAGAAAGCGGTGAAGGTAGGGGAATACTGGAGAGAAGTGGGAGGGTT TTCTAAAAAAGAGAGAAATGTCCCCTTTCCTTAA
AA sequence Show only first row Show all	>Lus10018560 pacid=23180497 polypeptide=Lus10018560 locus=Lus10018560.g ID=Lus10018560.BGIv1.0 annot-version=v1.0 MANGLVVGEEERNSNSETAAAAAMAMVMVLFSEEELKEMSGVKSGGDYIEVTCGCTSHRYGDAVGRLRVFVNGHLEITCECTPGCDEDKMTPAAFEKHSG RETARKWKNNVWVIVNGVKVPLSKTVLLKYYNQSLKGTNGAQRPQNGRVFHRDEFVRCSKCDKDRRFRLRTKEECRVHHDSVANANWKCADMPFDKLLCS TTSHGIRHDGDLCQYRSFTKAGVLPVKEGEAAALLEALRWVSDQGHQWCRRQKAVKVGEYWREVGGFSKKERNVPFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28190	ULT	ULT1	ULTRAPETALA1, Developmental re...		Lus10018560 [exp]	0	1
AT1G71860		ATPTP1, PTP1	protein tyrosine phosphatase 1...		Lus10006053 [exp]	7.1	0.9006
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10020310 [exp]	12.8	0.8853
AT4G21160		ZAC, AGD12	ARF-GAP domain 12, Calcium-dep...		Lus10038539 [exp]	13.5	0.8123
AT1G20950			Phosphofructokinase family pro...		Lus10016047 [exp]	13.7	0.8654
AT4G08960			phosphotyrosyl phosphatase act...		Lus10011297 [exp]	16.0	0.8841
AT3G53390			Transducin/WD40 repeat-like su...		Lus10019930 [exp]	16.7	0.8809
AT5G08570			Pyruvate kinase family protein...		Lus10041003 [exp]	16.7	0.8902
AT5G48520		AtAUG3	augmin 3, unknown protein		Lus10038231 [exp]	17.4	0.8480
AT1G47870	E2F_DP	ATE2FC, ATE2F2,...	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10033151 [exp]	20.0	0.8834
AT5G46630			Clathrin adaptor complexes med...		Lus10030961 [exp]	21.7	0.8303

Compare expression of checked genes

Lus10018560 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.