Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20840 339 / 3e-117 Secretory carrier membrane protein (SCAMP) family protein (.1) AT1G61250 327 / 2e-112 SC3 secretory carrier 3 (.1.2) AT1G11180 315 / 2e-107 Secretory carrier membrane protein (SCAMP) family protein (.1), Secretory carrier membrane protein (SCAMP) family protein (.2) AT1G03550 310 / 1e-105 Secretory carrier membrane protein (SCAMP) family protein (.1) AT1G32050 258 / 8e-86 SCAMP family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039794 [exp] 449 / 7e-160 AT2G20840 427 / 1e-151 Secretory carrier membrane protein (SCAMP) family protein (.1) Lus10033712 [exp] 404 / 2e-142 AT2G20840 416 / 1e-147 Secretory carrier membrane protein (SCAMP) family protein (.1) Lus10031627 [exp] 391 / 5e-137 AT2G20840 406 / 2e-143 Secretory carrier membrane protein (SCAMP) family protein (.1) Lus10038302 [exp] 323 / 1e-110 AT1G61250 442 / 3e-158 secretory carrier 3 (.1.2) Lus10018455 [exp] 319 / 4e-109 AT1G61250 440 / 2e-157 secretory carrier 3 (.1.2) Lus10011229 [exp] 312 / 2e-106 AT1G61250 436 / 1e-155 secretory carrier 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G144700 [exp] 373 / 2e-130 AT2G20840 438 / 1e-156 Secretory carrier membrane protein (SCAMP) family protein (.1) Potri.019G104000 [exp] 372 / 6e-130 AT2G20840 426 / 2e-151 Secretory carrier membrane protein (SCAMP) family protein (.1) Potri.011G045100 [exp] 330 / 2e-113 AT1G61250 397 / 4e-140 secretory carrier 3 (.1.2) Potri.004G036600 [exp] 324 / 6e-111 AT1G61250 357 / 3e-124 secretory carrier 3 (.1.2) Potri.001G134100 [exp] 283 / 2e-95 AT1G32050 399 / 8e-142 SCAMP family protein (.1) Potri.003G099300 [exp] 281 / 2e-94 AT1G32050 393 / 2e-139 SCAMP family protein (.1) Potri.004G036700 [exp] 135 / 9e-39 AT1G61250 158 / 3e-48 secretory carrier 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04144 [flax] [poplar] SCAMP SCAMP family
Representative CDS sequence Show only first row Show all	>Lus10018562 pacid=23180382 polypeptide=Lus10018562 locus=Lus10018562.g ID=Lus10018562.BGIv1.0 annot-version=v1.0 ATGAGTCGCTACGACGCCAACCCATTTGACGAGGAAGAAGAGGTCAATCCATTCTCGGATCAAGCAAAGGGGAAAGGATCCGGGCAGTCTAATTATGGTG GCAGTGGTGCTGGTGGCGCCTTCTACATGCCGAATCCAAGTGTTGCCCCTGCAACTTCGAGGCTTTCACCTCTACCTCCGGAGCCATATGATCGTGGTGC AACAGTTGACATTCCACTGGATAATGCAAAAGATTTCAAGTCCAAGGAGAAGGAACTCCAAGCTAAAGAGGCTGAGTTGAAGAGGAAGGAACAGGAATTG AAACGAAGAGAAGACGCAATAGCACGAGCTGGAGTTGTAATTGAAGAGAACAACTTCCCACCATTTTTCCCTATTATCCATCATGACATTGCGAACGAAA TACCAATCCATCTACAAAGGATACAATATGTCGCTTTCACCACTTTGTTGGGTATGTGGTATTTCATTCTCAACCTAGGTCTGGTATTGTGTCTTCTATG GAATGTCGTTGCAGTTACCACAGCCTGGATCAAAGGAGAAGGTCCGACGATCTGGTTTCTTGCTATCATCTACTTCTTGTCGGGGGTTCCTGGGGCCTAT GTTTGTTGGTATCGCCCCCTCTACCGAGCAATGAGGACTGATAGTGCTCTGAAATTCGGGTGGTTTTTTCTGGCTTACCTGTTCCACATCGGCTTCTGCA TCTTAGCTGCTGTTGCTCCGCCAATCATCTTCAAGGGGAAGTCTCTCGCAGGAATTTTGCCTGCTATTGATCTTCTTGGCAGCAATGCTCTTGTCGGGGT ATTCTACTTCATCGGATTCGCGTGTTTCACAGTCGAAGCCCTTCTCAGCATATGGGTTATCCAGCAAGTTTACATGTACTTCAGAGGAAGTGGGAAAGCT GCACAGATGAAACGGCAGGCGATGATGGCTGCACTCTGA
AA sequence Show only first row Show all	>Lus10018562 pacid=23180382 polypeptide=Lus10018562 locus=Lus10018562.g ID=Lus10018562.BGIv1.0 annot-version=v1.0 MSRYDANPFDEEEEVNPFSDQAKGKGSGQSNYGGSGAGGAFYMPNPSVAPATSRLSPLPPEPYDRGATVDIPLDNAKDFKSKEKELQAKEAELKRKEQEL KRREDAIARAGVVIEENNFPPFFPIIHHDIANEIPIHLQRIQYVAFTTLLGMWYFILNLGLVLCLLWNVVAVTTAWIKGEGPTIWFLAIIYFLSGVPGAY VCWYRPLYRAMRTDSALKFGWFFLAYLFHIGFCILAAVAPPIIFKGKSLAGILPAIDLLGSNALVGVFYFIGFACFTVEALLSIWVIQQVYMYFRGSGKA AQMKRQAMMAAL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20840			Secretory carrier membrane pro...		Lus10018562 [exp]	0	1
AT2G20840			Secretory carrier membrane pro...		Lus10039794 [exp]	1.0	0.9777
AT5G05010			clathrin adaptor complexes med...		Lus10018321 [exp]	1.4	0.9481
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Lus10026338 [exp]	2.8	0.9405
AT3G07950			rhomboid protein-related (.1)		Lus10036521 [exp]	3.2	0.9393
AT3G53380			Concanavalin A-like lectin pro...		Lus10019923 [exp]	3.6	0.9137
AT2G26730			Leucine-rich repeat protein ki...		Lus10033065 [exp]	4.0	0.9060
AT5G10840			Endomembrane protein 70 protei...		Lus10026254 [exp]	4.6	0.9463
AT4G29130		GIN2, ATHXK1	GLUCOSE INSENSITIVE 2, ARABIDO...		Lus10037588 [exp]	6.3	0.9192
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10029902 [exp]	7.5	0.9280
AT1G53290			Galactosyltransferase family p...		Lus10017943 [exp]	7.6	0.8928

Compare expression of checked genes

Lus10018562 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.