Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03390 452 / 3e-149 SRF3 STRUBBELIG-receptor family 3 (.1) AT2G20850 442 / 2e-145 SRF1 STRUBBELIG-receptor family 1 (.1) AT4G22130 351 / 1e-112 SRF8 STRUBBELIG-receptor family 8 (.1.2) AT1G11130 326 / 6e-101 SRF9, SCM, SUB STRUBBELIG-RECEPTOR FAMILY 9, SCRAMBLED, Leucine-rich repeat protein kinase family protein (.1) AT1G53730 289 / 2e-87 SRF6 STRUBBELIG-receptor family 6 (.1.2) AT3G14350 286 / 1e-86 SRF7 STRUBBELIG-receptor family 7 (.1.2.3) AT1G78980 262 / 1e-77 SRF5 STRUBBELIG-receptor family 5 (.1) AT3G13065 233 / 6e-67 SRF4 STRUBBELIG-receptor family 4 (.1) AT3G58690 216 / 3e-63 Protein kinase superfamily protein (.1) AT5G06820 218 / 3e-61 SRF2 STRUBBELIG-receptor family 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039795 [exp] 628 / 0 AT4G03390 892 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10031628 [exp] 545 / 0 AT4G03390 870 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10033711 [exp] 488 / 4e-163 AT4G03390 825 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10018459 [exp] 349 / 1e-110 AT4G03390 594 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10011223 [exp] 344 / 1e-108 AT4G03390 591 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10015549 [exp] 340 / 7e-105 AT4G22130 972 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10020030 [exp] 318 / 1e-98 AT4G22130 947 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10037464 [exp] 296 / 1e-90 AT1G53730 824 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Lus10003926 [exp] 297 / 2e-90 AT1G53730 885 / 0.0 STRUBBELIG-receptor family 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G103900 [exp] 486 / 7e-162 AT4G03390 801 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.013G144600 [exp] 479 / 2e-159 AT4G03390 783 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.004G037000 [exp] 377 / 2e-120 AT4G03390 645 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.011G045600 [exp] 372 / 2e-118 AT4G03390 617 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.011G010500 [exp] 343 / 4e-108 AT4G22130 916 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.004G005301 [exp] 342 / 2e-107 AT4G22130 906 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.001G161600 [exp] 305 / 2e-93 AT1G53730 590 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.003G073700 [exp] 305 / 3e-93 AT1G53730 575 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.014G001200 [exp] 272 / 2e-81 AT1G78980 817 / 0.0 STRUBBELIG-receptor family 5 (.1) Potri.007G002600 [exp] 271 / 4e-81 AT1G78980 499 / 1e-168 STRUBBELIG-receptor family 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10018563 pacid=23180510 polypeptide=Lus10018563 locus=Lus10018563.g ID=Lus10018563.BGIv1.0 annot-version=v1.0 ATGGGAGTGAAGAGATCTGGTGGGCAGTTGCTTCTGGTTTTTGCTTTGATCTGGGGAATTGAGTTTTCACTTGGAGCTACCAATCCAAATGATGTTACTG CAATCAATAGCTTATACACTTCACTGGGGAGTCCAGTGTTGCCTGGATGGGTTGCCAGCGGAGGCGACCCTTGTGGGGAAGCGTGGCAAGGTGTTCAGTG TGAGAATTCAGTGATTTTGTCCATAGTTCTCAATGGAGCTAACTTGGGTGGAGAACTAGGCAATAATTTGGGAACATTCTCATCTATCAGATCCCTAGAT CTAAGCAGTAACCACATTGGTGGGAGTATTCCATCTAGTCTGCCGGCTACATTGCGAACATTTTTCCTTGCAGCTAATAATTTCACTGGTAGCATTCCAG ATTCTCTATCCTCTCTATCTCTGTTGACAGCTTTGTCACTGAACAACAACCTTCTGAGTGGAGAAATACCTGATTCCTTTCAGTCCCTTGCCGGATTGAT CAATCTAGACTTATCCAGCAACAATTTTACTGGAAAACTACCTCCTTCTTTTAGTAACTTGAATCAACTTACAACATTGCGTTTGCAGGATAACCGGTTA TCCGGCACCCTTGATGTTCTGCAAGACCTTCCACTGCAAGATTTGAACATCGAGAATAATCTGTTCTCGGGACCGATACCTCAGAAGATGCTGAGTATTC CCACATTCAATAAAGGTGGAAACCCCTTCAACGCTACTGTTTCCCCATTTCTAGCACCCCCACCTCCAGCAATACTTCAAACTACACCACCGCCTTCCAG GAGAACTCCGGGGACACAAACAGAGGCGCCATCTTCTTCTCCTTCGAGTGGAAATCCTCCCAAGGCAACAACAGAGAGCATCCAAGAGACAATAATAGTA ACTTGTTATTGCCAACTAGTCAACCACCAATTGAAAAAGGAGGTTATGGCACAGGCAAAGAAAGATAATCCGGTCCTACAAGAATCACCTGAAAGAGACC TTCCTAAGCAGAATGATCATGGAATTGATTTGAGCCGTCTAGAGTCAACCGATATGAACTATATGCCTCCCACCGCACCGCCCCCTCCTCCTCCACCACC CCCTCCTCCCGTTCAGAAGGTCGTTGTTAAGCCGCTTGTGCCTGCAAAGCCTAGAAATGTCGTGACATCAGTTAAAACTTTCACCGTGGCGTCTCTTCAG CAATACACTAATAGCTTCTCTCCAGAGAATCTCATAGGAGGTGGTATGCTGGGAACTGTTTATAGAGCAGAGCTTCCTGATGGGAAGCTGCTGGCAGTGA AAAAGCTGGACAAGAAAGCAGCAAGCTTGCAGGAGGATGAGTTTCTTGAATTGGTCAACAACATTGACCGGATCCGACATGCTAACATCGTTGAGCTTAT GGGATACTGTGCTGAGCATGATCAGAGGCTTCTGATCTATGAATATTGCAGTAATGGCACCCTGCAGGATTTGCTTCACTTGGACGATGAACTGAAGGAC AATCTCACCTGGACCTCCCGCATTAGGTTGGCCCTTGGAGCCGCCAGAGCTTTAGCATATTTGCATGAGGTCTGCCAACCATCAGTTGTTCACAGAAATT TCAAGTCTGCCAATATTCTCCTTGATGATGATCTCGATGTCCGTGTCTCGGATTGCGGTTTGGCTACATTGATATCAACCGGTTCCGTAAGTCAGTTGTC GGGGCAACTGCTAACAGCATATGGCTACGGAGCACCGGAATTCGAGTCAGGAATTTACACCGTTCAGAGTGATGTCTACAGCTTTGGGGTTGTAATGTTG GAACTCTTGACCGGCCGAAAATCCTATGATCAGTCAAGAAATCGTGGCGAGCAGTTCCTAGTGAGGTGGGCAATCCCTCAGCTCCATGACATCGATGCAT TATCACGGATGGTTGACCCTTCTCTCGATGGTCAATACCCTGCGAAGTCGCTATCCCACTTCGCTGACATCATTTCACGATGTGTTCAGTCCGAGCCAGA ATTCCGACCACAGATGTCCGAGGTTGTTCAGGATATAACCAACATGATCAGAAAGGAACGCCCCAGCAGCGAATCCATCGGAGACTGA
AA sequence Show only first row Show all	>Lus10018563 pacid=23180510 polypeptide=Lus10018563 locus=Lus10018563.g ID=Lus10018563.BGIv1.0 annot-version=v1.0 MGVKRSGGQLLLVFALIWGIEFSLGATNPNDVTAINSLYTSLGSPVLPGWVASGGDPCGEAWQGVQCENSVILSIVLNGANLGGELGNNLGTFSSIRSLD LSSNHIGGSIPSSLPATLRTFFLAANNFTGSIPDSLSSLSLLTALSLNNNLLSGEIPDSFQSLAGLINLDLSSNNFTGKLPPSFSNLNQLTTLRLQDNRL SGTLDVLQDLPLQDLNIENNLFSGPIPQKMLSIPTFNKGGNPFNATVSPFLAPPPPAILQTTPPPSRRTPGTQTEAPSSSPSSGNPPKATTESIQETIIV TCYCQLVNHQLKKEVMAQAKKDNPVLQESPERDLPKQNDHGIDLSRLESTDMNYMPPTAPPPPPPPPPPPVQKVVVKPLVPAKPRNVVTSVKTFTVASLQ QYTNSFSPENLIGGGMLGTVYRAELPDGKLLAVKKLDKKAASLQEDEFLELVNNIDRIRHANIVELMGYCAEHDQRLLIYEYCSNGTLQDLLHLDDELKD NLTWTSRIRLALGAARALAYLHEVCQPSVVHRNFKSANILLDDDLDVRVSDCGLATLISTGSVSQLSGQLLTAYGYGAPEFESGIYTVQSDVYSFGVVML ELLTGRKSYDQSRNRGEQFLVRWAIPQLHDIDALSRMVDPSLDGQYPAKSLSHFADIISRCVQSEPEFRPQMSEVVQDITNMIRKERPSSESIGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10018563 [exp]	0	1
AT3G10650		AtNUP1	unknown protein		Lus10028861 [exp]	3.5	0.8339
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10039795 [exp]	6.5	0.8019
AT5G13980			Glycosyl hydrolase family 38 p...		Lus10041516 [exp]	6.5	0.7496
AT1G17760		CSTF77, ATCSTF7...	ARABIDOPSIS THALIANA CLEAVAGE ...		Lus10003684 [exp]	7.1	0.7921
AT3G11220		ELO1	ELONGATA 1, Paxneb protein-rel...		Lus10032284 [exp]	8.7	0.7507
AT1G17500			ATPase E1-E2 type family prote...		Lus10037622 [exp]	12.0	0.7369
AT4G23460			Adaptin family protein (.1)		Lus10017508 [exp]	14.5	0.7380
AT4G38470		STY46	serine/threonine/tyrosine kina...		Lus10022653 [exp]	14.5	0.7354
AT5G46190			RNA-binding KH domain-containi...		Lus10038509 [exp]	17.1	0.7477
AT2G27350		OTLD1	otubain-like deubiquitinase 1,...		Lus10013302 [exp]	18.0	0.7221

Compare expression of checked genes

Lus10018563 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.