Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03400 495 / 9e-170 GH3-10, DFL2 DWARF IN LIGHT 2, Auxin-responsive GH3 family protein (.1) AT2G46370 369 / 1e-120 FIN219, JAR1 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) AT2G47750 264 / 3e-80 GH3.9 putative indole-3-acetic acid-amido synthetase GH3.9 (.1) AT1G28130 264 / 4e-80 GH3.17 Auxin-responsive GH3 family protein (.1.2) AT1G48660 253 / 3e-76 Auxin-responsive GH3 family protein (.1) AT4G37390 248 / 3e-74 AUR3, YDK1, GH3-2, BRU6 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) AT5G13380 246 / 2e-73 Auxin-responsive GH3 family protein (.1) AT1G48670 242 / 9e-73 auxin-responsive GH3 family protein (.1) AT1G23160 243 / 2e-72 Auxin-responsive GH3 family protein (.1) AT1G59500 243 / 4e-72 GH3.4 Auxin-responsive GH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039797 [exp] 767 / 0 AT4G03400 769 / 0.0 DWARF IN LIGHT 2, Auxin-responsive GH3 family protein (.1) Lus10005151 [exp] 394 / 2e-130 AT2G46370 784 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) Lus10003039 [exp] 389 / 2e-128 AT2G46370 784 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) Lus10003598 [exp] 249 / 3e-74 AT5G54510 981 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10014804 [exp] 247 / 2e-73 AT5G54510 977 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10026600 [exp] 233 / 2e-68 AT2G14960 950 / 0.0 Auxin-responsive GH3 family protein (.1) Lus10013887 [exp] 230 / 2e-67 AT2G14960 949 / 0.0 Auxin-responsive GH3 family protein (.1) Lus10010391 [exp] 228 / 2e-66 AT4G37390 904 / 0.0 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) Lus10018510 [exp] 220 / 2e-63 AT5G54510 859 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G103500 [exp] 544 / 0 AT4G03400 897 / 0.0 DWARF IN LIGHT 2, Auxin-responsive GH3 family protein (.1) Potri.013G144300 [exp] 540 / 0 AT4G03400 852 / 0.0 DWARF IN LIGHT 2, Auxin-responsive GH3 family protein (.1) Potri.014G095500 [exp] 389 / 3e-128 AT2G46370 790 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) Potri.002G168200 [exp] 382 / 1e-125 AT2G46370 788 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) Potri.002G206400 [exp] 254 / 1e-76 AT2G47750 865 / 0.0 putative indole-3-acetic acid-amido synthetase GH3.9 (.1) Potri.009G092900 [exp] 249 / 2e-74 AT2G14960 1014 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.001G298300 [exp] 236 / 7e-70 AT2G14960 1016 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.011G129700 [exp] 236 / 2e-69 AT5G54510 1088 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.003G161300 [exp] 233 / 2e-68 AT1G28130 910 / 0.0 Auxin-responsive GH3 family protein (.1.2) Potri.001G410400 [exp] 227 / 4e-66 AT5G54510 1109 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF03321 [flax] [poplar] GH3 GH3 auxin-responsive promoter
Representative CDS sequence Show only first row Show all	>Lus10018565 pacid=23180491 polypeptide=Lus10018565 locus=Lus10018565.g ID=Lus10018565.BGIv1.0 annot-version=v1.0 ATGGAGGAGCATTCGCCTGCAATTACCAACGGCCATCATGCCGACATTGTTGGTTGGTTCGATGGCGCCGCCGAGAATGCCGGCCGCATACAGGAAGAAA CCCTCCGGCGGATTCTCAAGCTCAACTGGGGAGTTGAGTATCTCCGGAGATGGTTCGAAGAAGAAACAGAGTACTCTGGCGATATGCTTGATGAAATGGA CGCCTCCAAGATTGAATCTTTCTTTACCAGATCGGTCCCTCTAGCTAATCATGTCGATTTGGAGCCGTACATCCAGCGTATCGCCGACGGAGACACTTGC CTCCTCACCCGCCACCGCATCCCCACTCTCTCCCTGAGTTCGGGGACCACAGAAGGGAGGCAGAAGTACGTGCCACAGCGCGCAAACGACTTTACAGATG TTCACGCTAGCGGCGGCGTACAGGTCGATGAAGTTTCCGGTGAGGGAAGGCGGCAGGGTGTTGGAGTTAATCTACAGCGGGAAACAGTTCAAGACGGAAG CAGGTCTCACCGTCGGAACTGCCACCACGCACTACTACTCCAGCGAGGAGTTCAAGCTGAAGCAACAGCGGACCAAGCTATTCACCTGCAGTCCGCCGGA AGTAATCTTCGGCAAATAGTGCAAGCTTTTACGGCTTTCGAGGAGTTCTGGCGGGAGATCTGCAGTGACATCCGTTATGGACAACTCAGCCCGAGAATCA AGGGCGGGAAGGTAAGGCGGGCGGTTATGGATTTACTCACGCGTCCTGACCCAGATCTTGCGGGTCGGGTCGAGAGGCGGTGTGAAGTACTAGAGCGGAA GAGGTGGGTCAGGTTGGTGGGGGAGCTTTGGCCCAATGCGAAGTACGTTTACTCGATAATGACCGGGGCGATGCAGCAGTACTTGAGGAAACTTAGGGAC AACGCCGGACTTGGGTTGCCATTGATTAGCGCCGATTACGGGTCGACAGAGAGCTGGATCGGGGTGAATGTGGATCCCGGTTTGCCGCCCGAGGAGGTCA CGTTTGCCGTGGTGCCGAGTTTCTCGTATTTCGAGTTCATCCCGCTGTATAGAAAGACGGAGTTAGTCAACTTACCGTCGGGGAGGAAGGGTGTAATGGT AATTGCGTTGAAGTCGCGGAGGGTAATGACGACCTTGTGGAGGGAGAACCGGTTCCATTGTCGAGAGTTGAAATGGGTCAGCAGTATGAAATTGTGCTCA CTACTTTTACGGATTAACTGTCTCGATCATTTTAAAGGGTTGTACAAATATAGGCTAGGCGACATAGTAGAGGTGTCCGGCTTCCACAAGTCGACACCGA AACTCAACTTCCTATGCAGAAGGAAGCTAATCCTGACCATAAACATCGACAAAAACACTGAGAGAGACCTTCAAATCCTGGTCGAAAAGTGCGCCGTCTT CCCCGCCAAGAGGACAGCGGGAAAGGCAGAAATCGTCGACTTCACCAGCAATGTAGTTGGCATTGACGGCCATCCTGGACACTACGTCATCTGCTGGGAG ATCAAGGGTGACATGGCAGAGGATGACGTGTTGAGAGAATGTTGCACGGACAGTTCCTCCGTGGACCATGGCTACGTGGGGTCGAGGAAGGCAAACTCGA TCGGGCCGTTGGAGCTTAGGGTGGTGGAGATGGGAACGTTTAGGAAGATATTGGATTACTTCATTGGGAATGGGGCAGCCTTGAGCCAGTTCAAGACTCC TAGGTGTACTAGTAACGAGGTTTTGTCGAGGATTCTTGATGATTTCACTGTTAAGAGATTCTTTAGTACGCTTATCATAGTGATTAATTCTTAG
AA sequence Show only first row Show all	>Lus10018565 pacid=23180491 polypeptide=Lus10018565 locus=Lus10018565.g ID=Lus10018565.BGIv1.0 annot-version=v1.0 MEEHSPAITNGHHADIVGWFDGAAENAGRIQEETLRRILKLNWGVEYLRRWFEEETEYSGDMLDEMDASKIESFFTRSVPLANHVDLEPYIQRIADGDTC LLTRHRIPTLSLSSGTTEGRQKYVPQRANDFTDVHASGGVQVDEVSGEGRRQGVGVNLQRETVQDGSRSHRRNCHHALLLQRGVQAEATADQAIHLQSAG SNLRQIVQAFTAFEEFWREICSDIRYGQLSPRIKGGKVRRAVMDLLTRPDPDLAGRVERRCEVLERKRWVRLVGELWPNAKYVYSIMTGAMQQYLRKLRD NAGLGLPLISADYGSTESWIGVNVDPGLPPEEVTFAVVPSFSYFEFIPLYRKTELVNLPSGRKGVMVIALKSRRVMTTLWRENRFHCRELKWVSSMKLCS LLLRINCLDHFKGLYKYRLGDIVEVSGFHKSTPKLNFLCRRKLILTINIDKNTERDLQILVEKCAVFPAKRTAGKAEIVDFTSNVVGIDGHPGHYVICWE IKGDMAEDDVLRECCTDSSSVDHGYVGSRKANSIGPLELRVVEMGTFRKILDYFIGNGAALSQFKTPRCTSNEVLSRILDDFTVKRFFSTLIIVINS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03400		GH3-10, DFL2	DWARF IN LIGHT 2, Auxin-respon...		Lus10018565 [exp]	0	1
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10035207 [exp]	1.4	0.8335
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10010111 [exp]	5.3	0.8123
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10005592 [exp]	6.6	0.7944
AT3G16000		MFP1	MAR binding filament-like prot...		Lus10025768 [exp]	11.0	0.8451
AT3G01180		ATSS2	starch synthase 2 (.1)		Lus10033014 [exp]	15.7	0.7594
AT1G64810		APO1	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10039122 [exp]	17.0	0.8022
AT2G38270		ATGRX2, CXIP2	GLUTAREDOXIN, CAX-interacting ...		Lus10002847 [exp]	18.6	0.8287
AT2G40300		ATFER4	ferritin 4 (.1)		Lus10007523 [exp]	20.4	0.7667
					Lus10039851 [exp]	25.3	0.7542
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Lus10015831 [exp]	26.6	0.8269

Compare expression of checked genes

Lus10018565 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.