Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018566 pacid=23180411 polypeptide=Lus10018566 locus=Lus10018566.g ID=Lus10018566.BGIv1.0 annot-version=v1.0 ATGAAACATTTCCAAGATGAAGACGCATGCCTTACTTTTGCATCTGCAGCTTGTTTCTTGTACTGCTGGCTGGCTCTTTCCTCTGAACAAAGACAGGAAA AGATTGCAACTTTTCGTTCTAGATTCTTAAAACAAAAGGAAACGTGTGTTTTGGTTTGTGATCATAAGCTATGCTGTAAATATCTAATCATCTGTGGGGT TATGGAACAATCGGACCCTGAGGCGAAACCGGGGCCTATCAGGGACATATTATCAAAGCCACAAGTGGGGAAGAAAGAAAGCTATGGTCCTCAGTACCAA AGCAGCACTCACATCACCAAACTAGTTGGAGCATTGGAGCTGGATTTTAATGCCGTGTCTTGCTTCCTCAACACAAAAAGAGGTCTTGCTCTTTCTTCAT TTCACTAG
AA sequence Show only first row Show all	>Lus10018566 pacid=23180411 polypeptide=Lus10018566 locus=Lus10018566.g ID=Lus10018566.BGIv1.0 annot-version=v1.0 MKHFQDEDACLTFASAACFLYCWLALSSEQRQEKIATFRSRFLKQKETCVLVCDHKLCCKYLIICGVMEQSDPEAKPGPIRDILSKPQVGKKESYGPQYQ SSTHITKLVGALELDFNAVSCFLNTKRGLALSSFH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10018566 [exp]	0	1
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023908 [exp]	3.2	0.8640
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10010374 [exp]	3.2	0.8912
AT2G20725			CAAX amino terminal protease f...		Lus10039818 [exp]	9.6	0.7912
AT5G05670			signal recognition particle bi...		Lus10013031 [exp]	9.8	0.8556
					Lus10006003 [exp]	11.2	0.8500
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Lus10032849 [exp]	12.1	0.8624
AT1G49350			pfkB-like carbohydrate kinase ...		Lus10009862 [exp]	16.9	0.8419
AT1G16670			Protein kinase superfamily pro...		Lus10028149 [exp]	17.5	0.8478
AT2G46910			Plastid-lipid associated prote...		Lus10010277 [exp]	20.9	0.8319
AT5G37290			ARM repeat superfamily protein...		Lus10008435 [exp]	22.5	0.8609

Compare expression of checked genes

Lus10018566 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.