Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03560 862 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G65560 248 / 3e-71 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 244 / 5e-71 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 238 / 8e-69 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G04760 224 / 1e-64 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G02150 224 / 1e-63 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09900 221 / 1e-63 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G06920 221 / 9e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G16010 217 / 9e-62 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G64320 217 / 4e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039799 [exp] 671 / 0 AT1G03560 473 / 5e-164 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10012328 [exp] 234 / 5e-67 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 234 / 7e-67 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 226 / 2e-64 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013841 [exp] 226 / 3e-63 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021989 [exp] 227 / 7e-63 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036238 [exp] 221 / 7e-63 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 225 / 1e-62 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 224 / 1e-62 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G103400 [exp] 979 / 0 AT1G03560 911 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.004G013300 [exp] 254 / 2e-74 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 239 / 4e-69 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G109500 [exp] 233 / 5e-68 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G046000 [exp] 235 / 6e-68 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G019300 [exp] 229 / 8e-67 AT3G04760 776 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.001G180000 [exp] 229 / 6e-66 AT3G16010 950 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G047000 [exp] 226 / 2e-65 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.016G025600 [exp] 223 / 2e-63 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G098400 [exp] 224 / 3e-63 AT2G02150 924 / 0.0 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10018567 pacid=23180404 polypeptide=Lus10018567 locus=Lus10018567.g ID=Lus10018567.BGIv1.0 annot-version=v1.0 ATGCAGCTCGCGGGCTTAAGACCTCGAATTTTACTCTGTTCAGCTCGTCTCCTTTCTCTGCCTCTACCACCTCGCATCAATGGCGGCGGCAAATTCGAAC AAGGAAAGCGGCAACTGGAAGCCGCGCTGCCCATTTACGCCGCAAACATCCGGCGGATATTCACGGCGGACTCTCTACCTCCGCCCGAATGGATTGAGCC GTTCCACGACCTTTCAGATGTAGCTTGCAGATCTTCTCAGGAGCTAAAACCGTCTCCGTGGGTCTCCCAGATTCTCACCGTTTTGGACGGTTCTTCGGAA ATGGAGTCCAATCTCTCGTCCTTCTGCAGTAAGTTCTTGATAAAGCTGTCACCCAATTTCGTATCTTTTGTTTTGAAATCTGTGGAGTTGGAGAAAAGTC CCGAGCTTGCTATGAGGTTCTTCAATTGGAGTGGTAAGCAGAAGCGGTATTCTCACACCCTAGAATGCTACGTTTCCCTGATTAGTGTTTTAGCTGGAAA CGGCGATTTGGGAAAAGTGAGGCTTGTGTTTCTCGATTTGAGGCGTAAGGGATTCTTAATGACTGTTTCCCCTGTGAATTGTTTGATTAAGAGCTTTGGA AGTTTAGGAATGGTGGAGGAGTTGCTATGGGTGTGGCGTGGGATGAAGGAGAACGGGGTTGAACCGAGTCTGTTCACGTATAATTTCCTGGTTAGTGGTT TGGTTAAGGCTGGATATATCGATTCCGCTGAGCTTGTCTTTGAATCTATGAAAAATGGCAGGATTCAGCCTGATGTTGTTACTTACAACACCTTGATCAA AGGCTATTGCCAAGTCGGGAAAACGAAGAATGCCTTCCAAAGATTTCGAGAGATGGACTTGCTCGCGGACAAGATTACTTACACAACTTTGATCCAAGCG TGTTATTCGGAGGGCGATGTCGATCAATGTCTGTCTTTGTATCACGAAATGACCGAAAAGGGGTTGGAAATCCCGCCTCATGCGTATAGCTTGATGATTG GAGGGCTTTGTAAAGAAGGGAGATGTGTCGAAGGGTATGCTGTTTTCGAGAATATGATTCGGAATGGATGTAAGCCGAATGTTGCAATATACACGGCTTT GATGGACTCCAATGCGAAATGTGGAAACACGGGGGAGGCGATGCTGCTGTTCGAAAGGATGACAAGGGAAGGGCTTGAGCCGGACAAGGTTACTTATGGG GTTATTATTAACTGTCTGTGTAAGAATGGAAAGTTAGAAGAAGCAATTGATTGTTTGAGTTTGTGTAAAGAAAATGGAGTTGCAGTCAATGCTGTAATGT ATTGCAGTTTGATCGACGGTTTGGGAAAGGCCGGGAGAGTCGACGAAGCTGAAAGGCTATTTAACGAGATGAATGGACAAGGTTGTTTACCTGATTCCTA TTGCTATAATGCTCTGATTGATTCGCTTGCCAAATGTGGCAAGATTGATGAAGCGTTGGGCCTCTTTAGGAGAATGGAGGTTGAAGGATGTGACCAGACG GTTTACACGTATACCATACTCATGAGCGGGTTATTTCGAGAACACAGAAACGAAGAGGCATTGAAGGTTTGGGATGCGATGATTGATAAGGGAATCACAC CGACAGCGGCTGCTTTTAGAGTCCTGTCGATCGGCTTATGTCTATGTGGCAAGATAGCAAGAGCTTGTAAGATTTTGGATGACCTGGCACCGATTGGTGT GATTCCAGAGACGGCTTATGAAGATATGCTTAATGTATTGTGTAAAGCAGGAAGGGTGAAGGAGGCTTGTAAGTTGGCTGATGGGATCGTAGATAGGGGT CGAGAAGTTCCCGGGAGAGTTCGTACTGCTTTGTTGAATGCGTTGCGGAAAGCTGGCAACGTGGATATGGCCTTGAAATTGATGCATAGCAAGGTTGGTA TTGGGTATGATAGAATGGGCAGTGTTAAAAGGAGAGTGAAGTTTCGTATCCTTCTTGAAGGTTAA
AA sequence Show only first row Show all	>Lus10018567 pacid=23180404 polypeptide=Lus10018567 locus=Lus10018567.g ID=Lus10018567.BGIv1.0 annot-version=v1.0 MQLAGLRPRILLCSARLLSLPLPPRINGGGKFEQGKRQLEAALPIYAANIRRIFTADSLPPPEWIEPFHDLSDVACRSSQELKPSPWVSQILTVLDGSSE MESNLSSFCSKFLIKLSPNFVSFVLKSVELEKSPELAMRFFNWSGKQKRYSHTLECYVSLISVLAGNGDLGKVRLVFLDLRRKGFLMTVSPVNCLIKSFG SLGMVEELLWVWRGMKENGVEPSLFTYNFLVSGLVKAGYIDSAELVFESMKNGRIQPDVVTYNTLIKGYCQVGKTKNAFQRFREMDLLADKITYTTLIQA CYSEGDVDQCLSLYHEMTEKGLEIPPHAYSLMIGGLCKEGRCVEGYAVFENMIRNGCKPNVAIYTALMDSNAKCGNTGEAMLLFERMTREGLEPDKVTYG VIINCLCKNGKLEEAIDCLSLCKENGVAVNAVMYCSLIDGLGKAGRVDEAERLFNEMNGQGCLPDSYCYNALIDSLAKCGKIDEALGLFRRMEVEGCDQT VYTYTILMSGLFREHRNEEALKVWDAMIDKGITPTAAAFRVLSIGLCLCGKIARACKILDDLAPIGVIPETAYEDMLNVLCKAGRVKEACKLADGIVDRG REVPGRVRTALLNALRKAGNVDMALKLMHSKVGIGYDRMGSVKRRVKFRILLEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03560			Pentatricopeptide repeat (PPR-...		Lus10018567 [exp]	0	1
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10021766 [exp]	7.7	0.7633
AT4G36690		ATU2AF65A	U2 snRNP auxilliary factor, la...		Lus10024026 [exp]	11.3	0.7745
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10000213 [exp]	19.1	0.7436
AT1G52620			Pentatricopeptide repeat (PPR)...		Lus10036090 [exp]	19.6	0.7324
AT3G62080			SNF7 family protein (.1.2)		Lus10038021 [exp]	27.6	0.7383
AT1G69380		RRG	RETARDED ROOT GROWTH, Protein ...		Lus10037127 [exp]	36.9	0.7282
AT5G08560			transducin family protein / WD...		Lus10001410 [exp]	39.1	0.7215
AT1G78010			tRNA modification GTPase, puta...		Lus10029578 [exp]	46.2	0.7242
AT5G49840			ATP-dependent Clp protease (.1...		Lus10010691 [exp]	56.1	0.7044
AT3G46980		PHT4;3	phosphate transporter 4;3 (.1....		Lus10018203 [exp]	57.0	0.6986

Compare expression of checked genes

Lus10018567 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.