Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03410 425 / 8e-149 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT1G52870 412 / 1e-143 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT2G14860 76 / 1e-15 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT4G33905 74 / 7e-15 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT5G43140 74 / 1e-14 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT5G19750 62 / 1e-10 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT4G14305 55 / 1e-08 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT3G24570 55 / 2e-08 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039800 [exp] 590 / 0 AT4G03410 434 / 1e-152 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10043097 [exp] 402 / 1e-138 AT1G52870 505 / 2e-179 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10032655 [exp] 401 / 1e-137 AT1G52870 499 / 3e-176 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10002118 [exp] 74 / 1e-14 AT2G14860 292 / 6e-100 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10011424 [exp] 74 / 1e-14 AT2G14860 288 / 3e-98 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10034922 [exp] 66 / 3e-12 AT3G24570 330 / 4e-116 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10018700 [exp] 67 / 6e-12 AT5G43140 253 / 2e-83 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10023648 [exp] 62 / 4e-11 AT3G24570 330 / 6e-116 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10039003 [exp] 60 / 4e-10 AT5G19750 241 / 1e-79 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G103200 [exp] 454 / 1e-160 AT4G03410 413 / 2e-145 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.001G404600 [exp] 424 / 4e-148 AT1G52870 438 / 6e-154 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.011G123700 [exp] 416 / 5e-145 AT1G52870 472 / 1e-167 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.009G090600 [exp] 75 / 3e-15 AT4G33905 299 / 1e-102 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.001G296400 [exp] 74 / 8e-15 AT2G14860 300 / 6e-103 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.013G144251 [exp] 68 / 1e-14 ND / Potri.018G037100 [exp] 60 / 2e-10 AT3G24570 289 / 6e-100 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.018G081600 [exp] 57 / 3e-09 AT3G24570 309 / 7e-108 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.006G032500 [exp] 56 / 1e-08 AT5G19750 279 / 8e-94 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.016G029700 [exp] 56 / 2e-08 AT5G19750 257 / 5e-85 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04117 [flax] [poplar] Mpv17_PMP22 Mpv17 / PMP22 family
Representative CDS sequence Show only first row Show all	>Lus10018568 pacid=23180516 polypeptide=Lus10018568 locus=Lus10018568.g ID=Lus10018568.BGIv1.0 annot-version=v1.0 ATGGCTCTCCTTTCTCTCACCACCGCCGCAGCAGCAGCTCTCCCCAATCGCCTCCTCCTTTCTTCAAAACCCACCAAACAACCACTCGCCTGCCGCCCAT CCTTGAACACGATTCGCTCAAGCAGGAGGAAGAAACACCGCATCGTCGCATCGCTTACAGAGGAGAAGGAAGAAGTACTTCCCGTCAAAAAGCAGAGTCA CTCTCTGGATCTAGGCCCTCTTTCGTCCTCTCTATCTTCTCTAGCTGAAGAGTTCAAGGAAGATGACGATAAGGAGAGGATTATAAGCAGAGGGATTAAC GCCGCCATCGTTTTGGGCTTCGGGACTCTCGCCGTGTCCAGATTGCTCACGATCGACCATGATTACTGGCATGGATGGACGCTGTATGAGATACTAAGGT ATGCACCTGAGCACAATTGGACTGCATATGAGCAAGCTCTGAAATCGAATCCTGTATTGGCTAAGATGGCAATTAGTGGGATCGTCTATTCTATAGGAGA CTGGATTGCTCAATGCTGCGAAGGGAAGCCGCTGTTCGAGTTTGATCGAACTCGGATGTTCAGATCGGGGCTGGTTGGCTTTACACTTCACGGTTCCCTT TCTCATTACTACTACCAGTTCTGTGAGGCTCTTATCCCTTATCAGGATTGGTGGGTAGTACCTGCAAAAGTTGCATTTGATCAAACGGTCTGGGCAGCAA TCTGGAACAGCATCTATTTTGTGGCGCTTGGTTTCTTGCGATTCGAGTCCCCCGGTAACATCTTTAGTGAGCTCAAGGCGACATTCCGGCCAATGCTGAC TGCAGGATGGAAGCTATGGCCATTTGCCCATTTGATCACATATGGGGTCATCCCTCTGGAGCAAAGGCTTCTCTGGGTGGACTGCGTCGAGCTCATTTGG GTCACCATTCTCTCAACCTACTCGAATGAAAAGTCGGAAGCCCGAATTTCGGACTCAACTTTGGAGGCGGATTCGAGCTCTTCAGGCAACTCTTCTGAGA ACTACAACAAGAAGGATAAGAAGCAGAAAAGGAATCACGGTTCGACCAAATTCTTCGTCTTAGTCGATTACTTGTTCCTCTGCATCTTCCTCGCCTTCCT CTCCTTCATCATCTTCAAGATGTTCGGCGCCTGGTGA
AA sequence Show only first row Show all	>Lus10018568 pacid=23180516 polypeptide=Lus10018568 locus=Lus10018568.g ID=Lus10018568.BGIv1.0 annot-version=v1.0 MALLSLTTAAAAALPNRLLLSSKPTKQPLACRPSLNTIRSSRRKKHRIVASLTEEKEEVLPVKKQSHSLDLGPLSSSLSSLAEEFKEDDDKERIISRGIN AAIVLGFGTLAVSRLLTIDHDYWHGWTLYEILRYAPEHNWTAYEQALKSNPVLAKMAISGIVYSIGDWIAQCCEGKPLFEFDRTRMFRSGLVGFTLHGSL SHYYYQFCEALIPYQDWWVVPAKVAFDQTVWAAIWNSIYFVALGFLRFESPGNIFSELKATFRPMLTAGWKLWPFAHLITYGVIPLEQRLLWVDCVELIW VTILSTYSNEKSEARISDSTLEADSSSSGNSSENYNKKDKKQKRNHGSTKFFVLVDYLFLCIFLAFLSFIIFKMFGAW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03410			Peroxisomal membrane 22 kDa (M...		Lus10018568 [exp]	0	1
AT4G03410			Peroxisomal membrane 22 kDa (M...		Lus10039800 [exp]	1.0	0.9424
AT5G57040			Lactoylglutathione lyase / gly...		Lus10017158 [exp]	3.2	0.9353
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10026322 [exp]	7.4	0.9093
AT1G64680			unknown protein		Lus10001667 [exp]	9.0	0.9251
AT3G19900			unknown protein		Lus10034203 [exp]	9.5	0.8956
AT5G67030		NPQ2, LOS6, IBS...	NON-PHOTOCHEMICAL QUENCHING 2,...		Lus10009359 [exp]	10.9	0.9014
AT2G46100			Nuclear transport factor 2 (NT...		Lus10036387 [exp]	11.0	0.9037
AT1G07010		AtSLP1	Shewenella-like protein phosph...		Lus10031284 [exp]	11.3	0.9146
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10002500 [exp]	14.8	0.8354
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10010331 [exp]	15.5	0.8503

Compare expression of checked genes

Lus10018568 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.