Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03415 640 / 0 Protein phosphatase 2C family protein (.1.2) AT1G03590 623 / 0 Protein phosphatase 2C family protein (.1) AT1G16220 431 / 1e-147 Protein phosphatase 2C family protein (.1) AT1G79630 431 / 1e-147 Protein phosphatase 2C family protein (.1.2.3) AT3G02750 412 / 3e-140 Protein phosphatase 2C family protein (.1.2.3) AT5G36250 398 / 1e-135 Protein phosphatase 2C family protein (.1) AT5G27930 304 / 8e-100 Protein phosphatase 2C family protein (.1.2) AT3G05640 303 / 1e-99 Protein phosphatase 2C family protein (.1.2) AT5G01700 303 / 3e-99 Protein phosphatase 2C family protein (.1.2) AT3G16800 257 / 1e-81 Protein phosphatase 2C family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039802 [exp] 907 / 0 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10031631 [exp] 661 / 0 AT1G03590 600 / 0.0 Protein phosphatase 2C family protein (.1) Lus10033708 [exp] 660 / 0 AT1G03590 593 / 0.0 Protein phosphatase 2C family protein (.1) Lus10000402 [exp] 418 / 3e-142 AT1G79630 570 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Lus10027122 [exp] 415 / 3e-141 AT1G16220 567 / 0.0 Protein phosphatase 2C family protein (.1) Lus10022588 [exp] 376 / 2e-127 AT5G36250 421 / 1e-145 Protein phosphatase 2C family protein (.1) Lus10021486 [exp] 364 / 2e-122 AT3G02750 418 / 6e-143 Protein phosphatase 2C family protein (.1.2.3) Lus10041277 [exp] 381 / 6e-121 AT5G21160 563 / 0.0 LA RNA-binding protein (.1.2.3) Lus10037431 [exp] 377 / 1e-118 AT5G21160 643 / 0.0 LA RNA-binding protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G103100 [exp] 752 / 0 AT4G03415 706 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.013G144100 [exp] 746 / 0 AT4G03415 696 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.019G054200 [exp] 445 / 2e-153 AT3G02750 657 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.001G473300 [exp] 436 / 2e-149 AT1G16220 538 / 0.0 Protein phosphatase 2C family protein (.1) Potri.004G066200 [exp] 423 / 2e-144 AT1G16220 526 / 0.0 Protein phosphatase 2C family protein (.1) Potri.013G085500 [exp] 415 / 1e-141 AT3G02750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.016G127900 [exp] 353 / 2e-117 AT5G01700 368 / 9e-125 Protein phosphatase 2C family protein (.1.2) Potri.006G105000 [exp] 349 / 4e-116 AT5G01700 368 / 1e-124 Protein phosphatase 2C family protein (.1.2) Potri.018G059800 [exp] 313 / 6e-104 AT5G26010 323 / 9e-110 Protein phosphatase 2C family protein (.1) Potri.013G012200 [exp] 303 / 1e-99 AT5G27930 556 / 0.0 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10018570 pacid=23180392 polypeptide=Lus10018570 locus=Lus10018570.g ID=Lus10018570.BGIv1.0 annot-version=v1.0 ATGGGAGCTTGTTTGTCAACCAGCACTAGGAGTAGTTGTAGCAGTAGGAGCAATGGAGAAAGAAGACGTCCCTCGCCTCGTTTGGGTTTACGACGTTTTT GTGGACGGAAGAGAACCAAGAGGACATTCTCTGATCATGCGATGACACTGCAGCATTTGGGTTCCATACCGAACAGGATCTTTGCCAATGGGAAGAGCAC AAGTTCGTGTATCTTCACGCAGCAAGGACGGAAAGGGATTAATCAGGATGCAATGCTTGTATGGGAGGACTTCATGACAGAAGATGTGACGTTCTGTGGA GTTTTCGATGGCCATGGACCTCACGGCCACCTTGTCGCCAGGAAAGTTAGGGATACCTTGCCGGTAAAGTTGATGTCTTTCTTGAACTCTCATCAATCAA GGCAAGATGGGTCTGGTCAAACTCAAATATGTTGCAAAGGGAATTCAAAAGGATTAGAATGCAGAGACCTTGAGAAGGATGGTTCAGCAACTGAGGAGGA CAAATTGGATTCCATGTGGAGAGAAGCGTTTACCAAGTCGTATAAATCCATGGATAAAGAGCTCAAATCCCATCCCAACTTGGATTGTTTCTGTAGCGGG AGCACTTCGGTGACTATAGTGAAACAGGGATGTAATCTGTTTATGGGATATATTGGGGATTCTCGTGCGATCATGGGTTCCAAGGACAGCAATGATTCCA TGGTGGCTATCCAGTTGACCGTTGATCTGAAGCCTGATTTGCCAAGGGAGGCTGAGCGGATTAAGCGATGTAAAGGTCGAGTCTTTGCTTTACAAGATGA ACCTGAAGTGCCTAGAGTTTGGTTGCCATTTGATGATGCTCCTGGCCTAGCTATGGCCCGAGCATTCGGTGATTTTTGCTTGAAGGAGTATGGAGTTATA TCCGTACCAGAGTTCTCTCACCGCCTTCTCACCGAACGAGATCAATTCATTGTTCTTGCTTCAGATGGGGTGTGGGATGTGTTGAGCAATGAAGAAGTAG TGGAGATAGTAGCCACAGCTCCAACACGGTCATCCGCAGCGAGGCTACTGGTGGAGTCAGCGGCTCGAGAATGGAAGCTTAAGTACCCGACTTCGAAGAT GGATGACTGTGCAGTGGTGTGTTTGTTCCTGGATGGCACAATGGACTCGGAATCCTCCGATTGCGAAGAACAAGGCTTTTCTTCCTCTGCAATCAACCAT TCTGGCAATGCAGCTGAATCAGATGATGGGCAGGAGAAGGCAGCTGAGCCATGCCTGCAAAGGAACTTTACGGTGAGATCCTCCGAGGAAAACGAAGCTT ACTCGAGGCTGGCAGCCAACGACGAGAAGGTCGCTGGCCCGGAAGATGAAGGGTGGTCAGGGTTGGAAGGTGTGACTCGAGTGAACTCGCTCGTTCAGCT CCCGAGATTTTCTGGTGAAAGATCAAGCACATAA
AA sequence Show only first row Show all	>Lus10018570 pacid=23180392 polypeptide=Lus10018570 locus=Lus10018570.g ID=Lus10018570.BGIv1.0 annot-version=v1.0 MGACLSTSTRSSCSSRSNGERRRPSPRLGLRRFCGRKRTKRTFSDHAMTLQHLGSIPNRIFANGKSTSSCIFTQQGRKGINQDAMLVWEDFMTEDVTFCG VFDGHGPHGHLVARKVRDTLPVKLMSFLNSHQSRQDGSGQTQICCKGNSKGLECRDLEKDGSATEEDKLDSMWREAFTKSYKSMDKELKSHPNLDCFCSG STSVTIVKQGCNLFMGYIGDSRAIMGSKDSNDSMVAIQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVI SVPEFSHRLLTERDQFIVLASDGVWDVLSNEEVVEIVATAPTRSSAARLLVESAAREWKLKYPTSKMDDCAVVCLFLDGTMDSESSDCEEQGFSSSAINH SGNAAESDDGQEKAAEPCLQRNFTVRSSEENEAYSRLAANDEKVAGPEDEGWSGLEGVTRVNSLVQLPRFSGERSST

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03415			Protein phosphatase 2C family ...		Lus10018570 [exp]	0	1
AT3G63240			DNAse I-like superfamily prote...		Lus10022074 [exp]	1.4	0.8027
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10027351 [exp]	1.7	0.7961
AT3G09890			Ankyrin repeat family protein ...		Lus10021508 [exp]	5.2	0.7466
AT3G17180		SCPL33	serine carboxypeptidase-like 3...		Lus10037810 [exp]	5.9	0.8063
AT2G01275			RING/FYVE/PHD zinc finger supe...		Lus10004058 [exp]	7.7	0.7550
AT1G60800		NIK3	NSP-interacting kinase 3 (.1)		Lus10030591 [exp]	10.4	0.7694
AT4G32570	ZIM	TIFY8	TIFY domain protein 8 (.1)		Lus10013138 [exp]	11.0	0.7632
AT3G52270			Transcription initiation facto...		Lus10030963 [exp]	14.3	0.7857
AT1G16470		PAB1	proteasome subunit PAB1 (.1.2)		Lus10017135 [exp]	23.4	0.7953
AT1G13570			F-box/RNI-like superfamily pro...		Lus10040760 [exp]	24.8	0.7933

Compare expression of checked genes

Lus10018570 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.