Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03420 372 / 2e-129 Protein of unknown function (DUF789) (.1) AT1G03610 367 / 2e-127 Protein of unknown function (DUF789) (.1) AT4G28150 311 / 8e-106 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) AT1G73210 262 / 2e-86 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) AT1G17830 253 / 1e-82 Protein of unknown function (DUF789) (.1) AT1G15030 193 / 8e-59 Protein of unknown function (DUF789) (.1) AT2G01260 187 / 1e-56 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) AT5G49220 184 / 6e-55 Protein of unknown function (DUF789) (.1) AT4G16100 177 / 2e-52 Protein of unknown function (DUF789) (.1) AT5G23380 132 / 3e-36 Protein of unknown function (DUF789) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039803 [exp] 396 / 1e-139 AT1G03610 303 / 2e-103 Protein of unknown function (DUF789) (.1) Lus10031632 [exp] 391 / 2e-137 AT4G03420 345 / 2e-119 Protein of unknown function (DUF789) (.1) Lus10033707 [exp] 374 / 9e-130 AT4G03420 359 / 2e-124 Protein of unknown function (DUF789) (.1) Lus10038327 [exp] 259 / 8e-85 AT1G73210 319 / 1e-108 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Lus10036189 [exp] 233 / 5e-74 AT1G73210 298 / 2e-99 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Lus10037716 [exp] 190 / 7e-57 AT4G16100 311 / 4e-103 Protein of unknown function (DUF789) (.1) Lus10016841 [exp] 187 / 8e-56 AT4G16100 310 / 2e-102 Protein of unknown function (DUF789) (.1) Lus10037717 [exp] 183 / 3e-52 AT4G16100 321 / 2e-103 Protein of unknown function (DUF789) (.1) Lus10016842 [exp] 151 / 1e-42 AT4G16100 272 / 8e-89 Protein of unknown function (DUF789) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G144000 [exp] 432 / 2e-153 AT4G03420 414 / 2e-146 Protein of unknown function (DUF789) (.1) Potri.019G103000 [exp] 426 / 1e-150 AT4G03420 427 / 2e-151 Protein of unknown function (DUF789) (.1) Potri.017G155200 [exp] 279 / 1e-92 AT1G17830 328 / 9e-112 Protein of unknown function (DUF789) (.1) Potri.018G152500 [exp] 273 / 3e-90 AT1G17830 321 / 3e-109 Protein of unknown function (DUF789) (.1) Potri.010G000700 [exp] 199 / 1e-60 AT5G49220 342 / 3e-115 Protein of unknown function (DUF789) (.1) Potri.008G213300 [exp] 199 / 2e-60 AT5G49220 338 / 2e-113 Protein of unknown function (DUF789) (.1) Potri.010G120700 [exp] 194 / 5e-59 AT2G01260 367 / 1e-125 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.008G124000 [exp] 182 / 2e-54 AT2G01260 384 / 1e-132 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.017G152601 [exp] 77 / 2e-15 AT1G03610 95 / 9e-21 Protein of unknown function (DUF789) (.1) Potri.013G149400 [exp] 71 / 2e-13 AT1G15030 82 / 2e-16 Protein of unknown function (DUF789) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05623 [flax] [poplar] DUF789 Protein of unknown function (DUF789)
Representative CDS sequence Show only first row Show all	>Lus10018572 pacid=23180375 polypeptide=Lus10018572 locus=Lus10018572.g ID=Lus10018572.BGIv1.0 annot-version=v1.0 ATGGTGTTTGACAAAGGGTCAACGAGATCAAACCTCGATTGCTTCCTCAATTTCACTACCCCTGTAGTCGAATCTCATTTCCTGCCAAAGTCAGAGATTA GGAACTTGAACCGGCTGGGGGGCCCCTGGGAGAGAGACACCGTCGAGTATTTCACCCTCGCCGATCTCTGGAGCTGCTACGACGAGTGGAGCGCTTACGG CGCCGGAGTCCCCATCTCTCTGAATGGCGACGGCGACGGCGAGACGTTGGTACAGTACTACGTCCCGTACCTCTCCGCGATCCAAATCTTCACCAGCACC GCTGCTGCAGTAGGCGGCAGCAGGTACGAAACAGAATCCGCCGCCGGCGACAGCGACTCGTTCAGCAGCGGTGACGACAGCAGCGGCGAGAGCGAGAAGC TCTGTAAATGGGACGGATGCTCATCGGAAGAATTGGAACAGGACAATTTGACAACCCTTTGGCATCTGAATGATCGGTTAGGGTATCTGTATTTCCAGTA TTTCGAACGATCGACGCCTTACGGCAGAGTTCCATTGATGGATAAGATCAATGGATTAGCTCGAAGATACCCAGGTTTGATGTCTTTGAGAAGCGTGGAT CTCTCGCCAGCTAGCTGGATGTCCGTAGCTTGGTACCCAATCTATCACATACCGATGGGAAGAACAATCAAGGATTTGTCGACATGTTTTCTTACTTACC ATACCCTTTCATCATCTTTTCAAGATATGGATATAGAGGACGATCTAGAACAAAATAATGTAGGAGGAGTGGGAGGGAGGAGAAAGAGAAAACAAGGTGA GGGGATATCGTTGGCACCGTTCGGAATGGCTAGTTACAAGATGCAAGGGGACGTTTGGGTGTCGGGGAACCGCGGTCGGGACCAGGAGAGGCTGGTGTCG ATGGTGAGCGTGGCGGATTCGTGGCTCAAACAATTGAGGGTCCAACATCACGACTTCAATTACTTCATTGGGCTTCGTCGTGGCTGA
AA sequence Show only first row Show all	>Lus10018572 pacid=23180375 polypeptide=Lus10018572 locus=Lus10018572.g ID=Lus10018572.BGIv1.0 annot-version=v1.0 MVFDKGSTRSNLDCFLNFTTPVVESHFLPKSEIRNLNRLGGPWERDTVEYFTLADLWSCYDEWSAYGAGVPISLNGDGDGETLVQYYVPYLSAIQIFTST AAAVGGSRYETESAAGDSDSFSSGDDSSGESEKLCKWDGCSSEELEQDNLTTLWHLNDRLGYLYFQYFERSTPYGRVPLMDKINGLARRYPGLMSLRSVD LSPASWMSVAWYPIYHIPMGRTIKDLSTCFLTYHTLSSSFQDMDIEDDLEQNNVGGVGGRRKRKQGEGISLAPFGMASYKMQGDVWVSGNRGRDQERLVS MVSVADSWLKQLRVQHHDFNYFIGLRRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03420			Protein of unknown function (D...		Lus10018572 [exp]	0	1
AT5G66170		STR18	sulfurtransferase 18 (.1.2.3)		Lus10041894 [exp]	3.5	0.9131
AT5G66170		STR18	sulfurtransferase 18 (.1.2.3)		Lus10028442 [exp]	8.2	0.8793
AT5G03230			Protein of unknown function, D...		Lus10015087 [exp]	8.7	0.8935
AT1G23440			Peptidase C15, pyroglutamyl pe...		Lus10013026 [exp]	9.5	0.9191
AT1G27840		ATCSA-1	Transducin/WD40 repeat-like su...		Lus10018680 [exp]	10.8	0.8981
AT2G14440			Leucine-rich repeat protein ki...		Lus10041860 [exp]	14.8	0.9129
AT4G27450			Aluminium induced protein with...		Lus10033418 [exp]	17.3	0.9005
AT1G63420			Arabidopsis thaliana protein o...		Lus10024519 [exp]	18.9	0.8866
AT5G06080	AS2	LBD33	LOB domain-containing protein ...		Lus10004707 [exp]	19.0	0.8683
AT4G06534			unknown protein		Lus10024806 [exp]	19.2	0.9060

Compare expression of checked genes

Lus10018572 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.