Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19485 476 / 4e-154 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039804 [exp] 1759 / 0 AT1G19485 483 / 4e-156 Transducin/WD40 repeat-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G200900 [exp] 618 / 0 AT1G19485 726 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G036601 [exp] 515 / 1e-170 AT1G19485 499 / 8e-167 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10018573 pacid=23180374 polypeptide=Lus10018573 locus=Lus10018573.g ID=Lus10018573.BGIv1.0 annot-version=v1.0 ATGGATGAAGAAGGAGAAGAATTGTTAGCCGGCGCCGGAGTCGAGGTTTCCACATTCGATTACTCCGTCGAGAATCACTTGAAGGCAATCGACACGATTT CTGAGGTCTGTGGGGAATCAGACGCTGGGGATACTCTCGCCGAAGCTGAAATTCAGCGTCTTTCGTCGTCGATAACTTTCTTAAACAATGATTTTGTGAT GTATGTTGGAGGACCTGTTTGGGCATTGGATTGGTGCCCGCGAAGTCCTGAAAGACCTGAGACTAAGGTTAAATGTGAGTATGTTGCTATTGCTGCCCAT CCTCCAGGCTCCTACTATCACAAGATAGGTTCTCCGCGTGTTGGCAGAGGCGTTATTCAAATATGGTCCGTTCTTTATGTGCATAAGAACGAAGAGGAGA CACCTTCAGTTATCCGAAAGCCAGATATGGAGGCACAGCTTGTGAAATATGTAGATGACGAATCAAGTGAACCAAAAAGGCCACGAGGAAGGCCTAGGAA GAAGCAAGAGGATGATTCTGCTAAGGTCAAGAAGCCAAAAGGAAGACCCAGAAAGAAGCCAGTTGACGAACCAGGAAACATGCCTATTGATGGTTTAAAC TGCGATGACCAAGATATTCAACCCCTTGCTCTAGATTATTCCAGCAGTCCATGTCAACCACGGTTACCCAGAAAGAAGCTAGATGATGACTCTACAGGAG TCAAGAAGACAAAGGGAAGGCCCAGAAAGAAGGCAATTGATAAACCAAGGAACGGGGCAACTGATGTTTCAGATTGTGATGACCAAGACTTTCAACCTCT TGCTCTTGAATATCCTAGTACAGGTCATCAAGGAAGATCTAGGAAGAAGCAAGACGATAATTCCATTAAAGTTAAGAAGCCGAAAGGAAGAGCCAGAAAG ATACCAATTGATGAACCAACGAACAAGCCAACTGATAGTTTGGATTGTGATGATGAAGATGTTCAACCTCTTGCATTTTCATACCCCAACAGTTCATATC GACAAGGAAAATCGAGGAAGAAACAAGAGGATGATCCTACTGAAGCCAAGAAGTCAAAAGGAAGATTTAGCAAGGAGTCTACTAATGAACCAACAAACAG GACAATTGATGGTTTGGAATGTGACGACCAATTTGTTCAAGCTCTTGCTCTAGAATATCCGAACAGTTCATGTCAACCACTAGTTACAGAAAAAGATTCA GCCAACACAAAAGGAAAGAGACCGCAAAAGCAAGAGGTTAGGAAAAAAAACTTGTCGAATAAAGCGGTACCTACATCCTTATCGAATCATACTGGCGATT CTTCCCAGAATCCGCAGACCAATGAGAATTCCAATTATGTACGCACTTCAGACGATGGCTTGCAGCGTGGACGATTGAAACGTAAGAGAACTGCAGCAAG TAAGTATGATGATTATGTATGTTCATCATCAGTGAGTCAAGATGAGGGCCAGAATCACGAAACAAATGGCAAGTCCAAACAAGACGCAGCAGCTCTTGGA TTGGTTTCAGATCATGTCATCTCAAACACTGACAACCCTCCTCTGTCTATTCCGGAAGACGTAGCCTTACCAAGAGTTATGCTGTGCCTAGCTCATAATG GAAAAGTTGTTTGGGATGTAAAATGGAAGCCCTGGACAGTATCCAGTGCTAATTTCCCACACCGGATGGGTTATCTAGCTGTTTTGCTAGGAAATGGATC CATTGAAGTATGGGATGTTCCTCTTCCTCATATCGTGAAATCAATTTATTCTGCTTCACACGGGGAAGGATCTGATCCTCGCTTTATGAAATTGGAGCCG GTCTTCAGATGTTCAGTGCCACAAAGTGGACAGGTGAAGAGCATCCCTTTGACAGTGGAGTGGTCATATTCACAACCTCATGATTACTTGCTTGTTGGGT GCCATGACGGAACGGTTGGTTTGTGGAAATTCGTCACAAATGGATCAGCTGGAGATACGAGGCCTCTGCTATGCTTCAGCGCCGAAACCGGTCCTGTCAG GGCAATCACGTGGGCCCCAGCCGAAAGTGGTGAAGCTAGTGAACAATTAATTCTCACAGCGGGACATAAAGGCTTGAAGTTTTGGGATTTGCGTGATCCA TTTCGGCCACTCTGGGAGCTTCGGCCTGCACCAGGTTTCATATACAGTGTTGAGTGGGTATCACGTCCAAGTTGTGTATTGTTATCCTATGCAGATGGAA CAATTAGACTTATCAGTATGGTGAAAGCTGCATATGATGCAGCTGTCTATGGAGAACCGTCTGTCAGACCACAGCAACAAGGGATGCACATTATCGATTG CTCATCCTTCACGATCTGGAGCCTTCAGGTGTCCAAAATGACAGGAATGGTAGCATACTGTTCCGCCGATGGTACTGTTAGCCGCTTCCAGCTCACCAGT AAAGCAGTTGAGAAAGATCCATCGAGGAACCGAGTCCCTCATTTCGTATGCGGTTCGGTCACCGAGGATGCATCAGGCGGCCTAGTGATCAACACTCCAT TACCGAACACCCTAACTACAAAGAAGCCTCCCAAGATCAACGCCAATCCACGCTACCTCAGTGGCTTACTAATGATGATGAGCAAGGACGAGAAGGAGAA AGCCAATGGTCAACAGCTCGCATTGCGCGATGGTGATCCAGACGCAAATTTCGAATCCGATGAAGAAACGCCGGCTACCATTAGAATAAAGTCGAAGACA TGCTCCTCCGACGCAGCAAAGGGTCCAATTTTAAAATGCGGAGCAGACCATGAACAGGTCGAGAAGGGAAGAAGCAACAGTGTGAGGCAAGCACTGGTAC CGAAAAGGGACGAGACCCCCACAGAGGGGGTAACTGAACGCCTGCCATCGAAACTCGTGGCGATGCACAGAGTGAGGTGGAACATGAACAAGGGGAGCGA GAGATGGCTGTGCTCTGGAGGTGCGGCCGGAATCGTACGATGCCAAGAGATTGTGTTGTCTGAAATTGATATGGTCGTGGCCAAGAGAAGATAG
AA sequence Show only first row Show all	>Lus10018573 pacid=23180374 polypeptide=Lus10018573 locus=Lus10018573.g ID=Lus10018573.BGIv1.0 annot-version=v1.0 MDEEGEELLAGAGVEVSTFDYSVENHLKAIDTISEVCGESDAGDTLAEAEIQRLSSSITFLNNDFVMYVGGPVWALDWCPRSPERPETKVKCEYVAIAAH PPGSYYHKIGSPRVGRGVIQIWSVLYVHKNEEETPSVIRKPDMEAQLVKYVDDESSEPKRPRGRPRKKQEDDSAKVKKPKGRPRKKPVDEPGNMPIDGLN CDDQDIQPLALDYSSSPCQPRLPRKKLDDDSTGVKKTKGRPRKKAIDKPRNGATDVSDCDDQDFQPLALEYPSTGHQGRSRKKQDDNSIKVKKPKGRARK IPIDEPTNKPTDSLDCDDEDVQPLAFSYPNSSYRQGKSRKKQEDDPTEAKKSKGRFSKESTNEPTNRTIDGLECDDQFVQALALEYPNSSCQPLVTEKDS ANTKGKRPQKQEVRKKNLSNKAVPTSLSNHTGDSSQNPQTNENSNYVRTSDDGLQRGRLKRKRTAASKYDDYVCSSSVSQDEGQNHETNGKSKQDAAALG LVSDHVISNTDNPPLSIPEDVALPRVMLCLAHNGKVVWDVKWKPWTVSSANFPHRMGYLAVLLGNGSIEVWDVPLPHIVKSIYSASHGEGSDPRFMKLEP VFRCSVPQSGQVKSIPLTVEWSYSQPHDYLLVGCHDGTVGLWKFVTNGSAGDTRPLLCFSAETGPVRAITWAPAESGEASEQLILTAGHKGLKFWDLRDP FRPLWELRPAPGFIYSVEWVSRPSCVLLSYADGTIRLISMVKAAYDAAVYGEPSVRPQQQGMHIIDCSSFTIWSLQVSKMTGMVAYCSADGTVSRFQLTS KAVEKDPSRNRVPHFVCGSVTEDASGGLVINTPLPNTLTTKKPPKINANPRYLSGLLMMMSKDEKEKANGQQLALRDGDPDANFESDEETPATIRIKSKT CSSDAAKGPILKCGADHEQVEKGRSNSVRQALVPKRDETPTEGVTERLPSKLVAMHRVRWNMNKGSERWLCSGGAAGIVRCQEIVLSEIDMVVAKRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19485			Transducin/WD40 repeat-like su...		Lus10018573 [exp]	0	1
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Lus10017754 [exp]	3.7	0.8564
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10018113 [exp]	4.0	0.8343
AT3G63400			Cyclophilin-like peptidyl-prol...		Lus10013111 [exp]	4.5	0.8269
AT1G51610			Cation efflux family protein (...		Lus10033367 [exp]	6.2	0.7925
AT3G50430			unknown protein		Lus10022468 [exp]	7.3	0.8341
AT3G27390			unknown protein		Lus10014881 [exp]	7.5	0.8071
AT5G38520			alpha/beta-Hydrolases superfam...		Lus10023788 [exp]	7.7	0.7852
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10037787 [exp]	8.5	0.7951
AT2G35140			DCD (Development and Cell Deat...		Lus10018316 [exp]	9.6	0.8341
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Lus10007172 [exp]	9.6	0.7551

Compare expression of checked genes

Lus10018573 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.