Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03620 327 / 1e-113 ELMO/CED-12 family protein (.1) AT3G03610 268 / 2e-89 ELMO/CED-12 family protein (.1) AT2G44770 263 / 5e-88 ELMO/CED-12 family protein (.1) AT3G60260 258 / 3e-86 ELMO/CED-12 family protein (.1.2.3.4) AT1G67400 258 / 7e-86 ELMO/CED-12 family protein (.1) AT3G43400 165 / 1e-50 ELMO/CED-12 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039805 [exp] 454 / 4e-164 AT1G03620 327 / 3e-114 ELMO/CED-12 family protein (.1) Lus10024285 [exp] 266 / 3e-89 AT2G44770 454 / 1e-163 ELMO/CED-12 family protein (.1) Lus10037017 [exp] 266 / 5e-89 AT1G67400 386 / 2e-136 ELMO/CED-12 family protein (.1) Lus10015790 [exp] 263 / 6e-88 AT1G67400 385 / 4e-136 ELMO/CED-12 family protein (.1) Lus10009523 [exp] 258 / 2e-85 AT3G03610 429 / 4e-152 ELMO/CED-12 family protein (.1) Lus10020344 [exp] 256 / 8e-85 AT3G03610 428 / 1e-151 ELMO/CED-12 family protein (.1) Lus10003841 [exp] 234 / 1e-74 AT2G44770 407 / 2e-142 ELMO/CED-12 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G136200 [exp] 313 / 6e-107 AT1G03620 322 / 1e-110 ELMO/CED-12 family protein (.1) Potri.002G138700 [exp] 268 / 3e-90 AT3G60260 459 / 8e-166 ELMO/CED-12 family protein (.1.2.3.4) Potri.014G049800 [exp] 265 / 9e-89 AT3G60260 434 / 1e-155 ELMO/CED-12 family protein (.1.2.3.4) Potri.010G060700 [exp] 256 / 3e-85 AT1G67400 419 / 1e-149 ELMO/CED-12 family protein (.1) Potri.008G175301 [exp] 254 / 1e-84 AT1G67400 422 / 6e-151 ELMO/CED-12 family protein (.1) Potri.013G069000 [exp] 239 / 3e-78 AT3G03610 441 / 6e-157 ELMO/CED-12 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04727 [flax] [poplar] ELMO_CED12 ELMO/CED-12 family
Representative CDS sequence Show only first row Show all	>Lus10018574 pacid=23180499 polypeptide=Lus10018574 locus=Lus10018574.g ID=Lus10018574.BGIv1.0 annot-version=v1.0 ATGGGTAAAATCATTTTTCTTCAATCCAGTTTCCCACCCTCGTTTTCCTCCGGTCGTCGGAACTTCCATCTCCGTCGACCTTGCGACCGTCGTCTGGTCT CCTCCTCCTTAATGTTATCAAAAGCTAATGATATGGTTGGTCCACGATGGCTAGGAGGCCTTTTCAGTCGATTCAGCAAACCGGCTGACAAGTACCATAA CAACAACCCTCATCTGGAGCAAAGACTCGGTTGGCTTCAGAAACGAGTTCAGACCCCCTTCGACGAAAGTCGTCCTGATCATCAAGAAGCACTCAAGTCA CTTTGGAGTACATCCTTTCCAGACGTTCCCCTGATCGGAATGATCTCCGAGCAGTGGAAAGACATGGGGTGGCAGGGTGTCAATCCTGCAACTGACTTCA GGGGATGTGGGTTCATAGCACTCGAGAACTTGCTCTTCTTCGCTAGGACTTACCCGGCATCTTTCCGTAGGCTATTGTTGAAGCAGAACGGAGAACGATC CGAATGGGAATACCCGTTCGCTGTGGCTGGCATCAACGTCTCGTACATGCTCATTCAAATGCTGGATCTTCAATCAGAAAAGCCAAGCTCCAAGCCAGCA ACCAGTTTCCTTAAACTACTAGGAGAAGATGACACTGCGTTTGATGTCCTCTTCTGCATAACTTTCCAACTGATGGATGCTCAGTGGCTCGCCATGCGTG CTTCCTACATGGAGTTTAGTGAGGTTCTTCAAGTGACGAGAGCGCAGCTGGAAAGGGAGTTAGTGTTAGAAGACATACACAGAGTAATAGATTTGCCGGC GTACCTATTACTGTATCAATAG
AA sequence Show only first row Show all	>Lus10018574 pacid=23180499 polypeptide=Lus10018574 locus=Lus10018574.g ID=Lus10018574.BGIv1.0 annot-version=v1.0 MGKIIFLQSSFPPSFSSGRRNFHLRRPCDRRLVSSSLMLSKANDMVGPRWLGGLFSRFSKPADKYHNNNPHLEQRLGWLQKRVQTPFDESRPDHQEALKS LWSTSFPDVPLIGMISEQWKDMGWQGVNPATDFRGCGFIALENLLFFARTYPASFRRLLLKQNGERSEWEYPFAVAGINVSYMLIQMLDLQSEKPSSKPA TSFLKLLGEDDTAFDVLFCITFQLMDAQWLAMRASYMEFSEVLQVTRAQLERELVLEDIHRVIDLPAYLLLYQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03620			ELMO/CED-12 family protein (.1...		Lus10018574 [exp]	0	1
AT2G18370			Bifunctional inhibitor/lipid-t...		Lus10042512 [exp]	4.2	0.8175
					Lus10039943 [exp]	6.2	0.7674
					Lus10032804 [exp]	9.2	0.7167
AT3G19090			RNA-binding protein (.1)		Lus10027925 [exp]	9.8	0.7114
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10021456 [exp]	12.4	0.7109
AT5G09360		LAC14	laccase 14 (.1)		Lus10036070 [exp]	15.1	0.6876
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10008919 [exp]	16.3	0.6876
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10037137 [exp]	16.9	0.6854
AT2G26490			Transducin/WD40 repeat-like su...		Lus10016289 [exp]	17.4	0.6876
AT5G27470			seryl-tRNA synthetase / serine...		Lus10010212 [exp]	18.0	0.6386

Compare expression of checked genes

Lus10018574 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.