Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20875 120 / 2e-36 EPF1 epidermal patterning factor 1 (.1) AT1G34245 66 / 9e-15 EPF2 EPIDERMAL PATTERNING FACTOR 2, Putative membrane lipoprotein (.1) AT1G71866 64 / 1e-13 unknown protein AT2G30370 44 / 3e-06 EPFL6, CHAL EPF1-like 6, CHALLAH, allergen-related (.1.2) AT4G14723 40 / 6e-05 EPFL4, CLL2 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein AT3G22820 39 / 0.0001 EPFL5, CLL1 epidermal patterning factor like 5, CHALLAH-LIKE 1, allergen-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039807 [exp] 109 / 2e-32 ND 53 / 6e-11 Lus10024189 [exp] 41 / 2e-05 ND 107 / 4e-31
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G136100 [exp] 139 / 1e-43 AT2G20875 118 / 2e-35 epidermal patterning factor 1 (.1) Potri.019G102800 [exp] 136 / 1e-42 AT2G20875 118 / 1e-35 epidermal patterning factor 1 (.1) Potri.011G123000 [exp] 94 / 7e-26 AT2G20875 88 / 2e-23 epidermal patterning factor 1 (.1) Potri.013G116600 [exp] 70 / 2e-16 AT1G34245 102 / 2e-29 EPIDERMAL PATTERNING FACTOR 2, Putative membrane lipoprotein (.1) Potri.013G155500 [exp] 43 / 5e-06 AT2G30370 93 / 7e-25 EPF1-like 6, CHALLAH, allergen-related (.1.2) Potri.019G128200 [exp] 42 / 1e-05 AT2G30370 110 / 7e-32 EPF1-like 6, CHALLAH, allergen-related (.1.2) Potri.008G157300 [exp] 41 / 3e-05 AT4G14723 69 / 4e-16 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018576 pacid=23180466 polypeptide=Lus10018576 locus=Lus10018576.g ID=Lus10018576.BGIv1.0 annot-version=v1.0 ATGAAAGGGTTCTTGTTTTGCTTCCTAGTTCTCTCCATCTTAGTGGTACTTCTCCCTCGCCATGTCGTTTCGGGGCGACACGTTGCGAAGACGAATCGAT CACACCATGGGGATCATCATTCAGTAAGAGGAGGGAACAAGGTGGAGGAGACAATTATGAGCTACTACAGAAGACCGGTTCGAGGAGGGGGGTCAAAGAA GAACAACGGCGGGCCGGACACGGTCCAAATAGCGGGTTCGAGCTTGCCCGACTGCTCCCACGCGTGCGGGTCGTGCTCGCCGTGTAGGCTAGTGATGGTT AGCTTTGTGTGTGCTTCTTTGGAGGAAGCTGAGACTTGTCCCATGGCTTACAAGTGTATGTGCCATAACAAGTCCTACCCTGTCCCATAA
AA sequence Show only first row Show all	>Lus10018576 pacid=23180466 polypeptide=Lus10018576 locus=Lus10018576.g ID=Lus10018576.BGIv1.0 annot-version=v1.0 MKGFLFCFLVLSILVVLLPRHVVSGRHVAKTNRSHHGDHHSVRGGNKVEETIMSYYRRPVRGGGSKKNNGGPDTVQIAGSSLPDCSHACGSCSPCRLVMV SFVCASLEEAETCPMAYKCMCHNKSYPVP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20875		EPF1	epidermal patterning factor 1 ...		Lus10018576 [exp]	0	1
AT5G59530			2-oxoglutarate (2OG) and Fe(II...		Lus10022196 [exp]	2.0	0.9202
AT2G45970		CYP86A8, LCR	LACERATA, "cytochrome P450, fa...		Lus10017789 [exp]	3.5	0.9038
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10006610 [exp]	5.3	0.8893
					Lus10017791 [exp]	5.3	0.8856
AT2G16850		PIP3B, PIP2;8	PLASMA MEMBRANE INTRINSIC PROT...		Lus10027467 [exp]	6.2	0.8936
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10040873 [exp]	8.5	0.8862
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10034540 [exp]	9.2	0.8657
AT3G12610		DRT100	DNA-DAMAGE REPAIR/TOLERATION 1...		Lus10037705 [exp]	9.4	0.8733
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10035976 [exp]	10.0	0.8870
AT5G45950			GDSL-like Lipase/Acylhydrolase...		Lus10013956 [exp]	10.4	0.8837

Compare expression of checked genes

Lus10018576 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.