Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14830 188 / 1e-53 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G34220 119 / 2e-28 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G13340 108 / 2e-25 Regulator of Vps4 activity in the MVB pathway protein (.1) AT2G19710 110 / 4e-25 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G29440 109 / 1e-24 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT4G35730 107 / 1e-24 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G79910 105 / 2e-24 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G51900 103 / 4e-23 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G25420 97 / 6e-22 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) AT1G52315 92 / 3e-20 Regulator of Vps4 activity in the MVB pathway protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039808 [exp] 824 / 0 AT2G14830 181 / 2e-51 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10033703 [exp] 386 / 3e-128 AT2G14830 210 / 8e-62 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10028724 [exp] 127 / 4e-31 AT1G34220 417 / 1e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10006061 [exp] 126 / 6e-31 AT1G34220 417 / 2e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10041836 [exp] 121 / 2e-29 AT4G35730 423 / 2e-145 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10028383 [exp] 120 / 6e-29 AT4G35730 415 / 2e-142 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10000978 [exp] 114 / 3e-26 AT2G19710 308 / 6e-89 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10040542 [exp] 112 / 2e-25 AT2G19710 309 / 2e-89 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10034303 [exp] 108 / 5e-25 AT1G13340 243 / 5e-76 Regulator of Vps4 activity in the MVB pathway protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G135700 [exp] 257 / 2e-77 AT2G14830 228 / 2e-67 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.004G038600 [exp] 165 / 7e-44 AT2G14830 175 / 3e-48 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.011G122800 [exp] 151 / 2e-40 AT2G14830 137 / 5e-36 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.007G059800 [exp] 123 / 5e-30 AT4G35730 385 / 7e-130 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.019G087400 [exp] 121 / 4e-29 AT1G34220 357 / 5e-116 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.010G127000 [exp] 117 / 4e-28 AT1G13340 268 / 1e-85 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.013G117100 [exp] 117 / 9e-28 AT1G34220 357 / 2e-115 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.006G149800 [exp] 114 / 4e-26 AT2G19710 300 / 3e-86 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.008G121300 [exp] 107 / 1e-25 AT1G25420 361 / 3e-125 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) Potri.003G054500 [exp] 102 / 6e-23 AT1G79910 216 / 4e-65 Regulator of Vps4 activity in the MVB pathway protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03398 [flax] [poplar] Ist1 Regulator of Vps4 activity in the MVB pathway
Representative CDS sequence Show only first row Show all	>Lus10018577 pacid=23180500 polypeptide=Lus10018577 locus=Lus10018577.g ID=Lus10018577.BGIv1.0 annot-version=v1.0 ATGATGAACCAGCTGGTTTGCCCTGCAAGTACAAGCAAATCGCCAGTAGTGATCATCAATGGGAAGCAGACAGTTGGGAACGCCACCAAGAACTTCGCGA AACGAGTCCTAATGACCATACCCAAGTGCATGAACAAGCTGGTGAGAAAAGCAGTCGGGAAGCAGAGCGACAAGCTTGCAGGGATGTTCGATTGCTTGCT CGGATGGCGAAAAGCTTCCAAATGCAAGAGGACAGTGAGGAGGCTGCAGGTTCGGATGAGATCGCTGCGGAACAAGCGGCAATCGATGGCGAGACAGTCG AGAGAGGACGTCGTCCAGCTCATCAAGCTCGGCTGCCACAACATTGCTCTCGACAGGGTGGAGCAGGTGGTGAAGGACGAGGAGATGGTGAAAGTCTACG AATTGCTCGACAATTACTGTGATGTCATCTCGATCAACCTTGCCTACATTCGAAAGCGGAAGGACCTTCCGAATGACATCAATGAAGCGGTCTCGAGCCT GGTGTTTGCATCTGCGAGGATCGGGGACCTCCCTGAGCTTCAAATGGTCCGCGAGCTCGTTGAGGATCGATATGGACCAAGGTTTGAGAGGGCTGCGGTC AATCTCCTGCCTGGAAACCATGTCAACCATCAGGTTAGAGAGAAACTGATGGTTGAACCGGTTCCTGACGATGTGAAGCTGAGATTAATCGATGAGATCG CGAGGGATAATCGATTGTTGCCAGAGATTGTTGTGATGGATTACCCTCGAGAACTGAAACAGGAGAAGTTGGAAAATCCTGACGATCAAAAACTTTCCAG GGGGAAGAAACCTGAGGAAAATTTTGAAGGGAAAGGTTTGTACTCCGATGCGTCGTCGAGCAGCTTCAGCTCGAACCTGCCGACTTCCAGCAGCCAGAAT TCGTTCTCGGTCGTTTCTTCGTTCAACTACTCTGCCTTGGCTAATTCGTCTCAGGACGAATTGGACAACCTGATGAACCGTATCGGTACAAAGGAAATCC TGGTGCCTTACATGACAGGATCCAAAGCTGAAGAAGAATCTTCAAGAAAAATGATTGATTACATCGATGACGTAGAAGAATCTTCGAGGGAAGGAGGATT TGAGGACCAGAGGATATTCAAGTTCAGGACGGGGAAAGCTGATGAGATGACCGACTACATGGATACGGACGAGTACGGAAAAATCAGGTTGAGAAGGAGG GGGAAGAGTAATAGTAGTAGTTTCAGGAAAAGATCGAGAAAGCGGTCGTTTTCCAGGGAGATTCCTGAACTAGTTCTCGAAGACTTAATGTACTACGAAA ACCCATCCTGGAATAGGCCACCGAACCCGAGACAAGGATCGCATGAGTCAGAGCTTACTAATTACAAACCCGGTAAGCGGAACAAGGCGAGAAATGATGG GAAGATGGATGAAGGTAGCTCAGTTGGTAGCAATTTGTGTTCTCCTGACGAGCGAAGGAGAAGTATGAAGCCTCCCTATGGGAGGACAATGTCGATGCCA CAGGAAAGGTACAACGGTCCGGATTTTCAGCCGGAGAACATTTCGAGGACATTGTCGTTCCCGAATCAGTCGCCAAACCATGTGCATCCTAAGCTGCCGG ATTATGATGATCTCGCAGCTAAGTTTAAGGCTCTGAAGAAGGAACATCAAATTCAAAGGCATAGGCTTTACTGA
AA sequence Show only first row Show all	>Lus10018577 pacid=23180500 polypeptide=Lus10018577 locus=Lus10018577.g ID=Lus10018577.BGIv1.0 annot-version=v1.0 MMNQLVCPASTSKSPVVIINGKQTVGNATKNFAKRVLMTIPKCMNKLVRKAVGKQSDKLAGMFDCLLGWRKASKCKRTVRRLQVRMRSLRNKRQSMARQS REDVVQLIKLGCHNIALDRVEQVVKDEEMVKVYELLDNYCDVISINLAYIRKRKDLPNDINEAVSSLVFASARIGDLPELQMVRELVEDRYGPRFERAAV NLLPGNHVNHQVREKLMVEPVPDDVKLRLIDEIARDNRLLPEIVVMDYPRELKQEKLENPDDQKLSRGKKPEENFEGKGLYSDASSSSFSSNLPTSSSQN SFSVVSSFNYSALANSSQDELDNLMNRIGTKEILVPYMTGSKAEEESSRKMIDYIDDVEESSREGGFEDQRIFKFRTGKADEMTDYMDTDEYGKIRLRRR GKSNSSSFRKRSRKRSFSREIPELVLEDLMYYENPSWNRPPNPRQGSHESELTNYKPGKRNKARNDGKMDEGSSVGSNLCSPDERRRSMKPPYGRTMSMP QERYNGPDFQPENISRTLSFPNQSPNHVHPKLPDYDDLAAKFKALKKEHQIQRHRLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14830			Regulator of Vps4 activity in ...		Lus10018577 [exp]	0	1
AT5G05370			Cytochrome b-c1 complex, subun...		Lus10021674 [exp]	2.0	0.6916
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10004511 [exp]	4.9	0.6845
AT2G19380			RNA recognition motif (RRM)-co...		Lus10020460 [exp]	10.6	0.6778
AT2G17030			F-box family protein with a do...		Lus10022618 [exp]	12.1	0.6527
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10027136 [exp]	12.4	0.6283
AT1G14190			Glucose-methanol-choline (GMC)...		Lus10012816 [exp]	15.9	0.6400
AT5G05920		DHS, EDA22	embryo sac development arrest ...		Lus10020239 [exp]	21.4	0.6240
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Lus10017984 [exp]	23.2	0.6056
AT2G35612			unknown protein		Lus10034745 [exp]	29.3	0.6707
AT4G33830			Glycosyl hydrolase family 10 p...		Lus10014645 [exp]	32.1	0.6202

Compare expression of checked genes

Lus10018577 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.