Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03430 1469 / 0 EMB2770, STA1 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1) AT4G38590 161 / 3e-40 BGAL14 beta-galactosidase 14 (.1.2) AT3G17040 72 / 2e-12 HCF107 high chlorophyll fluorescent 107 (.1.2) AT5G41770 71 / 2e-12 crooked neck protein, putative / cell cycle protein, putative (.1) AT5G45990 56 / 1e-07 crooked neck protein, putative / cell cycle protein, putative (.1) AT3G13210 56 / 2e-07 crooked neck protein, putative / cell cycle protein, putative (.1) AT3G51110 54 / 5e-07 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G28740 49 / 2e-05 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G11964 45 / 0.0003 RNA binding;RNA binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039811 [exp] 1884 / 0 AT4G03430 1560 / 0.0 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1) Lus10016906 [exp] 105 / 9e-23 AT3G17040 761 / 0.0 high chlorophyll fluorescent 107 (.1.2) Lus10041477 [exp] 82 / 2e-15 AT5G41770 1161 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Lus10034294 [exp] 77 / 4e-14 AT5G41770 1153 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Lus10037766 [exp] 66 / 1e-10 AT3G17040 753 / 0.0 high chlorophyll fluorescent 107 (.1.2) Lus10022346 [exp] 58 / 3e-08 AT5G28740 905 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041573 [exp] 57 / 6e-08 AT5G28740 1386 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G135300 [exp] 1551 / 0 AT4G03430 1470 / 0.0 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1) Potri.001G094400 [exp] 85 / 2e-16 AT5G41770 1117 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Potri.003G137200 [exp] 79 / 9e-15 AT5G41770 1150 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Potri.010G145000 [exp] 70 / 5e-12 AT3G17040 797 / 0.0 high chlorophyll fluorescent 107 (.1.2) Potri.004G035600 [exp] 61 / 5e-09 AT5G28740 1418 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G040000 [exp] 45 / 0.0003 AT4G28200 801 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06424 [flax] [poplar] PRP1_N PRP1 splicing factor, N-terminal
Representative CDS sequence Show only first row Show all	>Lus10018580 pacid=23180397 polypeptide=Lus10018580 locus=Lus10018580.g ID=Lus10018580.BGIv1.0 annot-version=v1.0 ATGGTCTTCGTAAGATCTCCCAGCGGGGAGACAGTTTCAATCCACCTGAACCCTAGAACAGCCACTCTCTCCGCCCTCAAGCGCCAAATTGAATCGAAAA TCCTAATCCCGTCAGCTCATCAGCGGTTCCTTCTCCGGCGTCTCCCACCCAATGCTTCCGAATCCGATTCCCTTCTCCTATCTGACCTCGGCGTCACTCA TTACTCAACCTTGACGCTCCACGTCCCGTTGCTCGGCGGCGTCGGTGCTCCGCCACCAGTGCCGCCGCAGAAGCCCCGTCTCGAGTTCCTCAACTCTCGT CCTCCGGCGAACTATGTCGCAGGTCTCGGCCGTGGTGCCACCGGGTTCACCACCCGGTCCGATATCGGTCCGGCAAGAGCTGCGCCGGATCTTCCCGACA GATCTGCAACCACGGTTGGAGCTGCTGCTCCTGGTATGGGGAGGGGCGCTGGAGGAGCTCCACCTCCGGTGGAGGAAGAAGACGAGGAAGCGGAGGAGAA AGGGTACGACGAGAATCAGAAGTTCGATGAATTTGAAGGTAATGACGTCGGCCTGTTTGCTTCGACTGAGTATGATGAAGACGATAAGGAAGCCGATGCT GTTTGGGAGGCGATTGATAAGCGTATGGATTCCCGTAGAAAGGATAGGAGGGAGGCTAAGTTGAAGGAAGAGATTGAGAAGTATCGAGCTTCGAATCCGA AGATCACCGAGCAGTTCGCTGATTTGAAGAGGAAGCTCCACGGAATGTCGGCTAACGACTGGGAGAGCATCCCCGATATCGGAGATTACTCTCTGAGAAA CAAGAAAAAAAGGTTCGAAAGCTTCGTCCCTGTTCCTGATACTTTACTTGAGAAAGCTAGGCAAGAGAAAGAACATGTTACTGCGTTGGATCCGAAGAGT AGAGGTATCGGCGGGACCGAGACTCCATGGTCACAGACTCCGGTCACTGATTTGACAGCCGTTGGTGAAGGTAGAGGTACTGTGTTGTCTATTAAATTGG ATAGGTTGTCGGATTCGGTTTCTGGACAGACTGTTGTTGATCCGAAAGGTTACTTAACTGATTTGAAAAGTATGAAGATTAATAGTGATGCTGAGGTTTC TGATATAAAGAAGGCTAGGCTGCTGTTGACGAGTGTTATCCAGACTAATCCGAAGCATCCGCCCGGTTGGATTGCTGCTGCGAGGCTGGAAGAGGTGGCT GGGAAGATTAAAGTAGCTAGGCAGTTGCTTTCGAAAGGTTGCGAGGAGTGTCCGAAGAGCGAAGATGTTTGGTTAGAAGCTTGCCGGTTGGCGAGCCCTG ACGAAACGAAGTCTGTGATAGCGAGGGGAGTGAAGTGCATTCCTGGTTCGGTGAAGCTTTGGTTGCAAGCTTCTAAACTGGAGCACGATGATAAGAACAG GAGGAGGGTTTTGATGACGGGGATAGAACATATTCCAGATGCAGTTCGGTTGTGGAAAGCGGTAGTGGAATTGTCGAATGAATCTGAGGCTAGGGCTTTG CTACACCGGGCGGTCGAATGCTGTCCTTTGCATGTCGAATTATGGCTGGCTTTGGCTCGATTGGAGACTTACGAGCAGGCGAAAAAGGTGTTGAACCACG CTAGGATGAAGCTTCCCAAAGAGCCGGCTATTTGGATAACCGCTGCGAAGTTGGAAGAGGCGAATGGAAACACCACGATGGTTGGGAAAGTGATTGACAG AGGTATTAGGGCTTTGGAGCGAGAAGGCTTGGCAATTGATCGGGAAGTTTGGATGAGAGAAGCCGAGGCTGCAGAGAAGGCGGGATCTGTCGCTACTTGT CAGGCGATTGTTAGTAACACGATCGGGATCGGAGTTGAGGAAGAGGATAGGAAGAGGACTTGGGTGGCGGATGCTGAGGAGTGTACTAAGCGAGGATCGA TCGAGACCGCACGAGCTATCTACGCACATGCTCTAAGTGTGTTTTTGACCAAGAAGAGTATTTGGTTGAAAGCTGCTCAGCTCGAGAAGAGCCACGGAAC TCGAGAGTCTCTCGATGCTTTTTTGCGGAAGGCGGTTACTTATACTCCACAGACCGAGGTGCTCTGGCTCATGGGTGCGAAGGAGAAGTGGCTTGCTGGT GATGTTCCAGCTGCCAGGGCTATTCTAGATGAAGCTTATAAAGCCATACCAAACTCTGAGGAAATCCTGCTTGCTGCATTTAAGCTCGAATTTGAGAACC ACGAACCTCAAAGAGCGAGAATATTGCTCGCCAAATCGAGAGAGAGCGGAGGGACGGAAAGAGTCTGGATGAAATCCGCCATCGTAGAGAGAGAGTTAGG CAATGTCGACGAGGAAAGGAGGATGCTCGACGAAGGGTTGAAGCGATTCCCGTCGTTTTTCAAACTCTGGTTGATGCTCGGTCAGCTCGAAGAACGGCTC GGTCGGGCAGAAAAGGCTAGGCAGGTTTACGACTCGGGGCTAAAGCATTGCCCGAACTGCATACCTCTCTGGCTTTCCATGGCTTCGCTCGAAGAGAAAA TGAATGGGTTGAGTAAAGCTCGAGCTGTGCTGACGATTGCGAGGAAGAGAAACCCGAAAAACCCGGAACTGTGGCTTGCGGCTGTTCGTGCTGAATCGAG ACACGGTAAAGGTAAAGAAGCTGAGAGCTTGATGGCCAAGGCACTGCAGGAGTGTCCCAATAGCGGCATTCTCTGGGCGGCATCGATCGAGATGGCTAAT CGTCCACAACGTAAAAGCAGGAGTATGGATGCGTTGAAGAAAACCGACAACGATCCACACGTTATCGCTGCCGGTGCGAAACTGTTCATGCAGGAAAGGA AGGTCGATAAGGCAAGAAGCTGGCTGGGTCGTGCGGTTACAGTCGCACCGGATATAGGTGATTTCTGGGCGCTCTATTACAAGCTCGAACTGCAGCACGG AACCGAAGACACTCAAAGGGAAGTTTTAAAGAAGTGTACTGATGCTGATCCGAAGCATGGCGAGAAATGGCAAGCTGTATCGAAAGCTGTGGAGAATGCC CATCTGAGTACTGAAGCAATTTTGAAGAAAGTGGTTGTTGCTCTTGGGAAAGAACAGAGTGCTTCTGAGAATCAGAATAGCTAG
AA sequence Show only first row Show all	>Lus10018580 pacid=23180397 polypeptide=Lus10018580 locus=Lus10018580.g ID=Lus10018580.BGIv1.0 annot-version=v1.0 MVFVRSPSGETVSIHLNPRTATLSALKRQIESKILIPSAHQRFLLRRLPPNASESDSLLLSDLGVTHYSTLTLHVPLLGGVGAPPPVPPQKPRLEFLNSR PPANYVAGLGRGATGFTTRSDIGPARAAPDLPDRSATTVGAAAPGMGRGAGGAPPPVEEEDEEAEEKGYDENQKFDEFEGNDVGLFASTEYDEDDKEADA VWEAIDKRMDSRRKDRREAKLKEEIEKYRASNPKITEQFADLKRKLHGMSANDWESIPDIGDYSLRNKKKRFESFVPVPDTLLEKARQEKEHVTALDPKS RGIGGTETPWSQTPVTDLTAVGEGRGTVLSIKLDRLSDSVSGQTVVDPKGYLTDLKSMKINSDAEVSDIKKARLLLTSVIQTNPKHPPGWIAAARLEEVA GKIKVARQLLSKGCEECPKSEDVWLEACRLASPDETKSVIARGVKCIPGSVKLWLQASKLEHDDKNRRRVLMTGIEHIPDAVRLWKAVVELSNESEARAL LHRAVECCPLHVELWLALARLETYEQAKKVLNHARMKLPKEPAIWITAAKLEEANGNTTMVGKVIDRGIRALEREGLAIDREVWMREAEAAEKAGSVATC QAIVSNTIGIGVEEEDRKRTWVADAEECTKRGSIETARAIYAHALSVFLTKKSIWLKAAQLEKSHGTRESLDAFLRKAVTYTPQTEVLWLMGAKEKWLAG DVPAARAILDEAYKAIPNSEEILLAAFKLEFENHEPQRARILLAKSRESGGTERVWMKSAIVERELGNVDEERRMLDEGLKRFPSFFKLWLMLGQLEERL GRAEKARQVYDSGLKHCPNCIPLWLSMASLEEKMNGLSKARAVLTIARKRNPKNPELWLAAVRAESRHGKGKEAESLMAKALQECPNSGILWAASIEMAN RPQRKSRSMDALKKTDNDPHVIAAGAKLFMQERKVDKARSWLGRAVTVAPDIGDFWALYYKLELQHGTEDTQREVLKKCTDADPKHGEKWQAVSKAVENA HLSTEAILKKVVVALGKEQSASENQNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03430		EMB2770, STA1	STABILIZED 1, EMBRYO DEFECTIVE...		Lus10018580 [exp]	0	1
AT4G03430		EMB2770, STA1	STABILIZED 1, EMBRYO DEFECTIVE...		Lus10039811 [exp]	1.0	0.9386
AT2G15820		OTP51	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10020996 [exp]	2.0	0.8907
AT5G47400			unknown protein		Lus10004740 [exp]	2.8	0.8738
AT1G31840			Tetratricopeptide repeat (TPR)...		Lus10009465 [exp]	5.0	0.8713
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10015696 [exp]	5.5	0.8826
AT5G59160		PPO, TOPP2	PROTOPORPHYRINOGEN OXIDASE, ty...		Lus10040742 [exp]	6.7	0.8554
AT3G49500		SDE1, SGS2, RDR...	SUPPRESSOR OF GENE SILENCING 2...		Lus10002017 [exp]	8.1	0.8095
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Lus10011188 [exp]	9.9	0.8613
AT5G56680		SYNC1ARATH, SYN...	EMBRYO DEFECTIVE 2755, Class I...		Lus10012920 [exp]	11.5	0.8656
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10027835 [exp]	13.7	0.8391

Compare expression of checked genes

Lus10018580 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.