Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20780 668 / 0 AtPLT4 Major facilitator superfamily protein (.1) AT3G18830 396 / 9e-133 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT2G16120 374 / 2e-124 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT2G16130 374 / 3e-124 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT4G36670 363 / 2e-120 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT2G18480 363 / 4e-120 AtPLT3 Major facilitator superfamily protein (.1) AT2G43330 220 / 4e-65 ATINT1 inositol transporter 1 (.1) AT5G16150 181 / 2e-50 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) AT1G75220 177 / 2e-49 AtERDL6 ERD6-like 6, Major facilitator superfamily protein (.1) AT5G17010 177 / 3e-49 Major facilitator superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031637 [exp] 667 / 0 AT2G20780 693 / 0.0 Major facilitator superfamily protein (.1) Lus10033702 [exp] 657 / 0 AT2G20780 691 / 0.0 Major facilitator superfamily protein (.1) Lus10039813 [exp] 511 / 0 AT2G20780 430 / 1e-149 Major facilitator superfamily protein (.1) Lus10011288 [exp] 408 / 2e-137 AT3G18830 721 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10040482 [exp] 407 / 4e-137 AT3G18830 722 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10023640 [exp] 399 / 6e-134 AT3G18830 516 / 7e-180 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10042339 [exp] 399 / 1e-133 AT3G18830 735 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10035255 [exp] 374 / 3e-124 AT3G18830 656 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011287 [exp] 372 / 3e-123 AT3G18830 692 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G135200 [exp] 707 / 0 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.004G039100 [exp] 595 / 0 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.009G113600 [exp] 404 / 8e-136 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G152300 [exp] 379 / 5e-126 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G151725 [exp] 362 / 8e-120 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.006G158700 [exp] 361 / 1e-119 AT3G18830 477 / 6e-165 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.007G027900 [exp] 358 / 3e-118 AT4G36670 638 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Potri.007G126800 [exp] 207 / 2e-60 AT2G43330 710 / 0.0 inositol transporter 1 (.1) Potri.017G032200 [exp] 203 / 6e-59 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.004G097800 [exp] 186 / 8e-52 AT5G16150 656 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10018581 pacid=23180399 polypeptide=Lus10018581 locus=Lus10018581.g ID=Lus10018581.BGIv1.0 annot-version=v1.0 ATGGGGTTGATGACCATCCCAGAAAATGGCGTCGATGGAGAGATGGGTCTGGATTTGGGAGGAAACAAGAAGACCAACAAGTACAAGAGGATGGATTCCA AGGTCGACGATTTCGATTTCGATTTCGACGACGCTTCCGATTACATCCAGCAGCAGCAGAGGAAGAACAGCACGAGGAAGTATGTTCTCGCCTGCGCCGT CTTTGCTTCTCTGAACTCTGTACTTCTCGGCTACGATGTGGGCGTAATGAGCGGAGCGATCATATTCATCCAACAAGACCTCCACATAACCGAGGTACAA GAAGAAGTGCTAGTAGGTGCACTAAGCATTGTATCCCTCTTTGGAAGCTTAGCCGGAGGAAGAACATCAGACTACATTGGCCGGAAATGGACAATGGCGC TGGCCGCAGTTGTGTTCCAATCCGGAGCGGTTGTCATGACACTCGCCCCGTCATTCCAGACCCTAATGATCGGGCGTCTCCTGGCCGGAATCGGGATCGG GTTGGGTGTCATGATCGCGCCGGTCTACATTGCGGAGCTCTCTCCGACGGTCAACCGAGGGTCGTTGACTTCCTTCCCAGAGATCTTCATCAATTTGGGG ATCTTGCTAGGTTACGTCTCGAACTACGCGTTTTCGGGCCTTTCGGTTCATGTAAGCTGGAGGGTGATGCTTGCGGTAGGAATCATACCCTCGGTTTTCA TCGGGTTTGCGCTTTGTGTGATTCCCGAGTCCCCTAGGTGGCTCGTGATGCAGAATCGGATCGATGAGGCTCGGTCGGTTCTGCACAACACGATCGAGGA CGAAAAGGAGGTGGACGATCGGCTTGCCGAGATTCTGGCCGCAGCCAACGGCATCGGTGATAAGCATGGGCAGAAGGCGGTGTGGCGAGAAATGCTTACA CCGTCTCCGGCCCTTAGAAGGATGCTGGTGACCGGTTTCGGAATCCAGTGTTTCCAGCAGATTACAGGGATTGATGCGACGGTGTATTACAGCCCCGAGA TTTTCAAGACGGCCGGGATCGAGGACAACACGAAGATCCTGGCCGCCACGGTCGCTGTCGGGGTTACGAAGACGGTTTTCATAATGGTAGCAATCTTGTT GATAGACAAGCTAGGGAGGAAGCCCTTGTTGTATGTAAGCACAATTGGGATGACATTTTGCTTGTTTAGCTTGGGAGTCACGCTAACAAGCCTATCCGGC GATGCCGGGATCGGACTTGCTATCCTGTTCGTGTGCGCGAACGTGGCCTTCTTCTCGGTGGGGATCGGACCGGTGTGTTGGGTTGTCACCTCGGAGATCT TTCCTTTGAGGCTTCGAGCGCAGGCTGCTGCGCTCGGAGCGGTGGGGAACAGGGTGTGCAGTGGGTTGGTGGCAATGTCTTTCCTTTCAGTCGCAAAGGC TATTTCTGTCGGCGGGACTTTCTTTGTCTTCTCGGCTCTTTCGGCTCTTTCGGTGGCGTTCGTGTACACTTTGGTGCCCGAGACAAAAGGGAAGTCGTTG GAGGAGATCGAGGTTATGTTTGAAGGCGAACTTCACGGATGGCGGGGTGGTGGTGAGGTGGAGATGGGCGACGGTGAGCGTCTCGTTGAAGGCAAATGA
AA sequence Show only first row Show all	>Lus10018581 pacid=23180399 polypeptide=Lus10018581 locus=Lus10018581.g ID=Lus10018581.BGIv1.0 annot-version=v1.0 MGLMTIPENGVDGEMGLDLGGNKKTNKYKRMDSKVDDFDFDFDDASDYIQQQQRKNSTRKYVLACAVFASLNSVLLGYDVGVMSGAIIFIQQDLHITEVQ EEVLVGALSIVSLFGSLAGGRTSDYIGRKWTMALAAVVFQSGAVVMTLAPSFQTLMIGRLLAGIGIGLGVMIAPVYIAELSPTVNRGSLTSFPEIFINLG ILLGYVSNYAFSGLSVHVSWRVMLAVGIIPSVFIGFALCVIPESPRWLVMQNRIDEARSVLHNTIEDEKEVDDRLAEILAAANGIGDKHGQKAVWREMLT PSPALRRMLVTGFGIQCFQQITGIDATVYYSPEIFKTAGIEDNTKILAATVAVGVTKTVFIMVAILLIDKLGRKPLLYVSTIGMTFCLFSLGVTLTSLSG DAGIGLAILFVCANVAFFSVGIGPVCWVVTSEIFPLRLRAQAAALGAVGNRVCSGLVAMSFLSVAKAISVGGTFFVFSALSALSVAFVYTLVPETKGKSL EEIEVMFEGELHGWRGGGEVEMGDGERLVEGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10018581 [exp]	0	1
AT1G05270			TraB family protein (.1)		Lus10015104 [exp]	6.7	0.8706
AT2G04550		DSPTP1E, IBR5	DUAL SPECIFICITY PROTEIN PHOSP...		Lus10000921 [exp]	7.9	0.8992
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10029417 [exp]	8.0	0.9139
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Lus10003134 [exp]	8.7	0.9149
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10033058 [exp]	9.2	0.8927
AT3G50120			Plant protein of unknown funct...		Lus10010064 [exp]	12.5	0.9093
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10010067 [exp]	12.7	0.9131
AT3G44260		AtCAF1a	CCR4- associated factor 1a, Po...		Lus10004212 [exp]	14.0	0.9029
AT5G44440			FAD-binding Berberine family p...		Lus10039682 [exp]	16.0	0.8776
AT1G70570			anthranilate phosphoribosyltra...		Lus10036848 [exp]	16.2	0.8633

Compare expression of checked genes

Lus10018581 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.