Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20760 194 / 4e-59 Clathrin light chain protein (.1) AT2G40060 155 / 3e-45 CLC2 clathrin light chain 2, Clathrin light chain protein (.1) AT3G51890 149 / 1e-42 Clathrin light chain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039815 [exp] 408 / 3e-143 AT2G20760 189 / 2e-57 Clathrin light chain protein (.1) Lus10018480 [exp] 182 / 1e-54 AT2G20760 239 / 4e-77 Clathrin light chain protein (.1) Lus10011194 [exp] 181 / 3e-54 AT2G20760 235 / 2e-75 Clathrin light chain protein (.1) Lus10004389 [exp] 145 / 4e-41 AT2G40060 220 / 9e-72 clathrin light chain 2, Clathrin light chain protein (.1) Lus10040187 [exp] 142 / 7e-40 AT2G40060 211 / 3e-68 clathrin light chain 2, Clathrin light chain protein (.1) Lus10030401 [exp] 127 / 2e-34 AT2G40060 197 / 2e-62 clathrin light chain 2, Clathrin light chain protein (.1) Lus10037839 [exp] 95 / 5e-22 AT2G40060 135 / 4e-42 clathrin light chain 2, Clathrin light chain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G102000 [exp] 202 / 9e-62 AT2G20760 212 / 2e-65 Clathrin light chain protein (.1) Potri.011G049500 [exp] 173 / 3e-51 AT2G20760 201 / 2e-62 Clathrin light chain protein (.1) Potri.004G040100 [exp] 172 / 2e-50 AT2G20760 216 / 7e-68 Clathrin light chain protein (.1) Potri.016G114700 [exp] 163 / 4e-48 AT2G40060 217 / 2e-70 clathrin light chain 2, Clathrin light chain protein (.1) Potri.008G066800 [exp] 150 / 2e-43 AT2G40060 191 / 3e-60 clathrin light chain 2, Clathrin light chain protein (.1) Potri.010G190400 [exp] 145 / 3e-41 AT2G40060 215 / 1e-69 clathrin light chain 2, Clathrin light chain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01086 [flax] [poplar] Clathrin_lg_ch Clathrin light chain
Representative CDS sequence Show only first row Show all	>Lus10018582 pacid=23180478 polypeptide=Lus10018582 locus=Lus10018582.g ID=Lus10018582.BGIv1.0 annot-version=v1.0 ATGGCTCCTCCGTTCGATTCATTCGCCGTCGAAGGAGAACAACAAACCACATTCTCCGCTGCAGAAGCATCTCCTACTCCTCAGCCGCCGCCACCACCGT TGGGAGACGACGAAAACGACGATGGGTTCATGTCCTCGTCACACGACCACCACCCTTTGCAACATTTCGACGATTCCTCCTCCGCTGGATTCATCCCCGC CGACGCTCCTCATCCGCCGCCGTCGAATCCCTTCCCTGACGAATACCCATCAGTCGATTACGGATCTCAGTTCGAGACAAATGACGGTGGAGATGTTGGT GGTGGTGGAAGCATTTTTGTTTCGGAGGATGGCCCTGTTCTGCCGGATCATACTCAGATGGTGGAGGAAGGTTCCCGGCGACGGGAGTGGCGCCGGCAAA ATGCGATTCATTTGGAGGAAAAGGAGAAGAAGGAGAAGGAGATGAGGAATCAGATCATTAATGAAGCGGAGGAGTACAAGCGGCAGTTCTACGAGAAGCG GAACCAGAACTGCGAGACCAATAAGACTCGAAACCGAGAACGAGAGAAGCTGTACCATGCAAACCAAGAGAAGTTCCACAAGGAAGCAGCAGACATCAAC TACTGGAAAGCCATAGCAGAGATCATCCCAAGGGAAGTAGCAAAGCTGGAGACCAGAAGATCATCAGCAACATCCAAGAACAAGGATTCTGATCAGAAAC AAACAGGATCAGTGATTGTAGTTCAAGGACCGAAACCCGGGAAGCCAACTGACATGGTCAGGATGAGGCAGATCATCTCCAAGCTGAAACAGAACCCTCC TCCCCACATGATGCCCCCTCCTCCTCCTCCAGCCAAAGATGACAAGAAAAAGGAAGAAGAGAAAAAAGATGGTGATGCCAAGAAGGAAGAGAAAAAGGAT GTCAAGAAATTACCCTCGGAATCTGATGCAAAAAAGCCAAGTTCAGGACCTGATCAGAAGCCTGAGAAAGATGAAGAGAATCGGTCTAGTAAATTACCAT CTGACCCTCTAGCTGGGATTGGTCAGGTTGATCAGAAACAGGCTGCTGCAGGATCAAGCAAGTGA
AA sequence Show only first row Show all	>Lus10018582 pacid=23180478 polypeptide=Lus10018582 locus=Lus10018582.g ID=Lus10018582.BGIv1.0 annot-version=v1.0 MAPPFDSFAVEGEQQTTFSAAEASPTPQPPPPPLGDDENDDGFMSSSHDHHPLQHFDDSSSAGFIPADAPHPPPSNPFPDEYPSVDYGSQFETNDGGDVG GGGSIFVSEDGPVLPDHTQMVEEGSRRREWRRQNAIHLEEKEKKEKEMRNQIINEAEEYKRQFYEKRNQNCETNKTRNREREKLYHANQEKFHKEAADIN YWKAIAEIIPREVAKLETRRSSATSKNKDSDQKQTGSVIVVQGPKPGKPTDMVRMRQIISKLKQNPPPHMMPPPPPPAKDDKKKEEEKKDGDAKKEEKKD VKKLPSESDAKKPSSGPDQKPEKDEENRSSKLPSDPLAGIGQVDQKQAAAGSSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20760			Clathrin light chain protein (...		Lus10018582 [exp]	0	1
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Lus10026064 [exp]	4.2	0.9738
AT1G26945	bHLH	KDR, PRE6	KIDARI, basic helix-loop-helix...		Lus10036732 [exp]	6.7	0.9750
AT4G16515		RGF6	root meristem growth factor 6,...		Lus10008506 [exp]	10.4	0.9818
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10040484 [exp]	11.0	0.9665
AT1G08770		PRA1.E	prenylated RAB acceptor 1.E (....		Lus10018774 [exp]	13.3	0.9442
AT1G67190			F-box/RNI-like superfamily pro...		Lus10020611 [exp]	17.1	0.8768
AT4G34770			SAUR-like auxin-responsive pro...		Lus10012185 [exp]	17.3	0.9789
					Lus10025807 [exp]	20.5	0.9767
AT4G12690			Plant protein of unknown funct...		Lus10006223 [exp]	22.2	0.9661
					Lus10019223 [exp]	23.6	0.9765

Compare expression of checked genes

Lus10018582 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.