Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28250 367 / 3e-129 ATHEXPBETA1.6, ATEXPB3 expansin B3 (.1.2) AT2G20750 338 / 5e-118 ATHEXPBETA1.5, ATEXPB1 expansin B1 (.1) AT1G65680 217 / 4e-70 ATHEXPBETA1.4, ATEXPB2 expansin B2 (.1) AT2G45110 186 / 4e-58 ATHEXPBETA1.1, ATEXPB4 expansin B4 (.1) AT1G65681 176 / 9e-55 EXPB6 beta expansin 6 (.1) AT3G60570 175 / 4e-54 ATHEXPBETA1.3, ATEXPB5 expansin B5 (.1) AT1G12560 110 / 7e-29 ATHEXPALPHA1.26, ATEXP7, ATEXPA7 expansin A7 (.1) AT4G17030 105 / 5e-27 ATHEXPBETA3.1, ATEXPR1, AT-EXPR, ATEXLB1 expansin-like B1 (.1) AT3G15370 105 / 6e-27 ATHEXPALPHA1.24, ATEXP12, ATEXPA12 expansin 12 (.1) AT1G62980 103 / 4e-26 ATHEXPALPHA1.25, ATEXP18, ATEXPA18 EXPANSIN 18, expansin A18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039816 [exp] 498 / 0 AT4G28250 402 / 3e-143 expansin B3 (.1.2) Lus10038933 [exp] 214 / 2e-68 AT1G65680 301 / 1e-102 expansin B2 (.1) Lus10036066 [exp] 211 / 3e-68 AT1G65680 286 / 1e-97 expansin B2 (.1) Lus10033700 [exp] 167 / 7e-50 AT1G65680 233 / 2e-75 expansin B2 (.1) Lus10031638 [exp] 167 / 4e-49 AT2G20770 238 / 3e-76 GCR2-like 2 (.1) Lus10011012 [exp] 123 / 8e-34 AT4G17030 219 / 2e-71 expansin-like B1 (.1) Lus10001010 [exp] 121 / 3e-33 AT4G17030 223 / 6e-73 expansin-like B1 (.1) Lus10040149 [exp] 119 / 3e-32 AT4G17030 221 / 2e-72 expansin-like B1 (.1) Lus10001009 [exp] 118 / 5e-32 AT4G17030 308 / 2e-106 expansin-like B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G134300 [exp] 400 / 3e-142 AT4G28250 402 / 2e-143 expansin B3 (.1.2) Potri.019G101900 [exp] 393 / 1e-139 AT4G28250 367 / 1e-129 expansin B3 (.1.2) Potri.014G066300 [exp] 213 / 2e-68 AT1G65680 322 / 2e-111 expansin B2 (.1) Potri.001G151500 [exp] 118 / 5e-32 AT4G17030 297 / 6e-102 expansin-like B1 (.1) Potri.001G112900 [exp] 110 / 7e-29 AT1G12560 364 / 5e-128 expansin A7 (.1) Potri.003G083200 [exp] 108 / 4e-28 AT4G17030 311 / 1e-107 expansin-like B1 (.1) Potri.001G401700 [exp] 107 / 1e-27 AT3G15370 348 / 2e-122 expansin 12 (.1) Potri.009G141400 [exp] 104 / 2e-26 AT4G38400 349 / 5e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.004G181700 [exp] 103 / 3e-26 AT4G38400 348 / 3e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.001G001100 [exp] 103 / 3e-26 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10018583 pacid=23180383 polypeptide=Lus10018583 locus=Lus10018583.g ID=Lus10018583.BGIv1.0 annot-version=v1.0 ATGCAGCTGATGTGGTTCAACATTCTGTTTTTCGCTTCTGTATTCTTCTTCACCGTCTCCGGCCAGGTCCCAGTCCACCACCCTGCTGCATCTGACGACC ACCATTGGCACCCCGCCACCGCTACCTGGTACGGCAGCCCAGAAGGCGACGGCAGCGACGGAGGGGCGTGCGGGTACGGGTCGATGGTGGACGTGAAGCC ACTGCGGGCGCGGGTCGGAGCCGTCAGCCCTGTTCTTTTCCGGAGCGGGGAAGGGTGCGGAGCTTGCTACAAGGTGAAGTGCTTGGACAAGAGTATCTGC TCGAGAAGGGCGGTCACCGTAATTGTCACCGACGAGTGTCCCGGCGGGTACTGCTCTGGCGGAAAAACCCACTTCGACCTCAGCGGCGCGGCATTCGGAC GCATGGCTGTCACCGGAGAAGCCGGCATGCTCCGCAACAAAGGCGAGCTCCCCGTCATTTTTCGACGGACGCCGTGCAAATATCCCGGGAAGAACATAGC GTTCCACGTGAACGAAGGCTCGACGGACTTCTGGCTATCACTGCTTGTAGAGTTCGAGGATGGTGATGGTGACGTCGGTTCCATGCACATCCGACAGGGA GGTGGGAGTGAGTGGATGGAGATGAAGCATGTGTGGGGAGCAACATGGTGCATAGTTGGTGGGCCATTGAGAGGTCCATTCTCAGTGAAGCTCACCACTC TGTCTACAGGCAAATCTCTCTCAGCTAGGGATGTTATCCCAAGCAACTGGTCTCCCAAGGCCACTTACACTTCACGACTCAACTTCCTCCACTAG
AA sequence Show only first row Show all	>Lus10018583 pacid=23180383 polypeptide=Lus10018583 locus=Lus10018583.g ID=Lus10018583.BGIv1.0 annot-version=v1.0 MQLMWFNILFFASVFFFTVSGQVPVHHPAASDDHHWHPATATWYGSPEGDGSDGGACGYGSMVDVKPLRARVGAVSPVLFRSGEGCGACYKVKCLDKSIC SRRAVTVIVTDECPGGYCSGGKTHFDLSGAAFGRMAVTGEAGMLRNKGELPVIFRRTPCKYPGKNIAFHVNEGSTDFWLSLLVEFEDGDGDVGSMHIRQG GGSEWMEMKHVWGATWCIVGGPLRGPFSVKLTTLSTGKSLSARDVIPSNWSPKATYTSRLNFLH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28250		ATHEXPBETA1.6, ...	expansin B3 (.1.2)		Lus10018583 [exp]	0	1
AT2G04540			Beta-ketoacyl synthase (.1)		Lus10033810 [exp]	14.0	0.8277
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10014976 [exp]	15.4	0.8594
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10010969 [exp]	20.3	0.8380
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Lus10028403 [exp]	24.4	0.8518
AT5G19420			Regulator of chromosome conden...		Lus10039525 [exp]	25.7	0.8479
AT2G02910			Protein of unknown function (D...		Lus10036741 [exp]	28.3	0.8178
AT5G51690		ACS12	1-amino-cyclopropane-1-carboxy...		Lus10038899 [exp]	31.3	0.8167
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Lus10027713 [exp]	31.6	0.8259
AT1G53050			Protein kinase superfamily pro...		Lus10035892 [exp]	32.3	0.8301
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Lus10025995 [exp]	36.0	0.8015

Compare expression of checked genes

Lus10018583 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.