Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20740 228 / 8e-76 Tetraspanin family protein (.1.2.3) AT2G20230 101 / 9e-26 Tetraspanin family protein (.1) AT4G28770 95 / 3e-23 Tetraspanin family protein (.1.2) AT1G32400 81 / 2e-18 TOM2A tobamovirus multiplication 2A (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039817 [exp] 387 / 3e-138 AT2G20740 266 / 3e-90 Tetraspanin family protein (.1.2.3) Lus10022841 [exp] 114 / 6e-31 AT2G20230 294 / 2e-100 Tetraspanin family protein (.1) Lus10011910 [exp] 114 / 9e-31 AT2G20230 281 / 2e-95 Tetraspanin family protein (.1) Lus10030939 [exp] 112 / 9e-30 AT1G32400 364 / 1e-127 tobamovirus multiplication 2A (.1.2.3) Lus10011042 [exp] 105 / 3e-27 AT1G32400 378 / 4e-133 tobamovirus multiplication 2A (.1.2.3) Lus10003011 [exp] 104 / 4e-27 AT1G32400 311 / 2e-107 tobamovirus multiplication 2A (.1.2.3) Lus10040108 [exp] 79 / 8e-18 AT1G32400 240 / 3e-80 tobamovirus multiplication 2A (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G134200 [exp] 240 / 2e-80 AT2G20740 239 / 2e-80 Tetraspanin family protein (.1.2.3) Potri.019G101800 [exp] 224 / 3e-74 AT2G20740 238 / 1e-79 Tetraspanin family protein (.1.2.3) Potri.011G050900 [exp] 174 / 1e-54 AT2G20740 223 / 4e-74 Tetraspanin family protein (.1.2.3) Potri.004G041500 [exp] 172 / 4e-54 AT2G20740 226 / 3e-75 Tetraspanin family protein (.1.2.3) Potri.003G087800 [exp] 103 / 2e-26 AT1G32400 319 / 7e-110 tobamovirus multiplication 2A (.1.2.3) Potri.001G146100 [exp] 103 / 2e-26 AT1G32400 329 / 8e-114 tobamovirus multiplication 2A (.1.2.3) Potri.002G253500 [exp] 87 / 2e-20 AT2G20230 255 / 5e-85 Tetraspanin family protein (.1) Potri.018G038400 [exp] 84 / 1e-19 AT2G20740 109 / 4e-29 Tetraspanin family protein (.1.2.3) Potri.006G241400 [exp] 80 / 6e-18 AT2G20740 108 / 1e-28 Tetraspanin family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0347 [flax] [poplar] Tetraspannin PF00335 [flax] [poplar] Tetraspanin Tetraspanin family
Representative CDS sequence Show only first row Show all	>Lus10018584 pacid=23180467 polypeptide=Lus10018584 locus=Lus10018584.g ID=Lus10018584.BGIv1.0 annot-version=v1.0 ATGACGAGGGTGATGAGGAGCTGCGTTCAATCGATACTGAAGCTAGTGAATTCGGTCGGCGGCATGGTTGGGTTAGGGATGGTGCTGTATGCGGTTTGGC TGATTAGGGCTTGGCAGAGGGAAACTGGTGAATTCCCCTTTGGAGATTTCGATAATATCTCTGCGCCGTGGTTCATTTACACTTTCCTAGGTCTTGGTGC TGCTTTATGTGTTATCTCATGCTTCGGCCATGTTTCTGCGGAAATCGCCAATGGCTGTTGCCTCTATTTCGCTGCTGTGACAGTAGATGTATTCCTGAAC CGAGATTGGGAGAAGGACTTCCCTAAGGACCCGAGCGGGTGTTTTGACCGGTTCAAAGGTTTCATCCGATCGCACTTCGAGATATGCAAATTGGTCGGCT TGTCAATCGTTGCTGTCCAGGCACTATCGTTTCTCCTTGCCATGGTACTCAAAGGTCTCGGTCCCCATCCGTATTACTACGACAGTGATGACGATTGCAT TCCGGAAAGAGCTCCGCTTCTGAGGCACCCGGTCTATCAACCCAGTTATGTCGTTGGAAACCCGATTCTTGCACCAAGAACCGACTCATGGAACGCAAGG GTTAACGAGAAGGTAAGAGAGTACCTCCGTATTCGCAGCAGCTATTGTTCTATTGAATCGGTCGGTGGTTAA
AA sequence Show only first row Show all	>Lus10018584 pacid=23180467 polypeptide=Lus10018584 locus=Lus10018584.g ID=Lus10018584.BGIv1.0 annot-version=v1.0 MTRVMRSCVQSILKLVNSVGGMVGLGMVLYAVWLIRAWQRETGEFPFGDFDNISAPWFIYTFLGLGAALCVISCFGHVSAEIANGCCLYFAAVTVDVFLN RDWEKDFPKDPSGCFDRFKGFIRSHFEICKLVGLSIVAVQALSFLLAMVLKGLGPHPYYYDSDDDCIPERAPLLRHPVYQPSYVVGNPILAPRTDSWNAR VNEKVREYLRIRSSYCSIESVGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20740			Tetraspanin family protein (.1...		Lus10018584 [exp]	0	1
AT4G36195			Serine carboxypeptidase S28 fa...		Lus10028365 [exp]	1.7	0.9233
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Lus10004821 [exp]	2.8	0.8965
AT4G38580		HIPP26, ATFP6	HEAVY METAL ASSOCIATED ISOPREN...		Lus10041879 [exp]	3.2	0.9026
AT3G10210			SEC14 cytosolic factor family ...		Lus10035431 [exp]	4.9	0.9034
AT4G21215			unknown protein		Lus10018373 [exp]	5.1	0.8830
AT5G19070			SNARE associated Golgi protein...		Lus10004421 [exp]	5.3	0.9000
AT5G05760		ATSYP31, ATSED5...	T-SNARE SED 5, syntaxin of pla...		Lus10040213 [exp]	5.5	0.9125
AT1G77370			Glutaredoxin family protein (....		Lus10028355 [exp]	7.1	0.8832
AT2G20740			Tetraspanin family protein (.1...		Lus10039817 [exp]	7.7	0.8931
AT5G35460			unknown protein		Lus10021569 [exp]	8.9	0.8851

Compare expression of checked genes

Lus10018584 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.