Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20725 190 / 1e-58 CAAX amino terminal protease family protein (.1) AT1G14270 61 / 8e-11 CAAX amino terminal protease family protein (.1.2.3.4) AT5G60750 45 / 4e-05 CAAX amino terminal protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039818 [exp] 329 / 2e-114 AT2G20725 210 / 5e-68 CAAX amino terminal protease family protein (.1) Lus10037179 [exp] 60 / 4e-10 AT1G14270 347 / 8e-121 CAAX amino terminal protease family protein (.1.2.3.4) Lus10036748 [exp] 60 / 5e-10 AT1G14270 400 / 6e-140 CAAX amino terminal protease family protein (.1.2.3.4) Lus10024708 [exp] 42 / 0.0004 AT5G60750 444 / 2e-155 CAAX amino terminal protease family protein (.1) Lus10017536 [exp] 42 / 0.0005 AT5G60750 422 / 2e-148 CAAX amino terminal protease family protein (.1) Lus10028751 [exp] 42 / 0.0005 AT5G60750 429 / 4e-151 CAAX amino terminal protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G101100 [exp] 223 / 1e-71 AT2G20725 224 / 5e-72 CAAX amino terminal protease family protein (.1) Potri.008G147600 [exp] 54 / 4e-08 AT1G14270 362 / 1e-124 CAAX amino terminal protease family protein (.1.2.3.4) Potri.001G097500 [exp] 44 / 5e-05 AT5G60750 460 / 2e-163 CAAX amino terminal protease family protein (.1) Potri.003G133800 [exp] 41 / 0.0009 AT5G60750 461 / 6e-164 CAAX amino terminal protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0472 [flax] [poplar] Peptidase_U PF02517 [flax] [poplar] CPBP CPBP intramembrane metalloprotease
Representative CDS sequence Show only first row Show all	>Lus10018585 pacid=23180441 polypeptide=Lus10018585 locus=Lus10018585.g ID=Lus10018585.BGIv1.0 annot-version=v1.0 ATGATTCTGGCTGCTTACTGGCCGGCGATATCTATTCTCCAATCCGCAACCAAAACCAAAATTCCATCTACCAAAATCCACCCTTCCTCCTACGTTCTCC GATCCAGATTTCATTTCACCTCCTCCTTCCGATGTCCTTGCAGCAACGGCGGAAGCGAAAGGGAATCCGCCGCCGCCAACAAAAAGGCCACCGAGATCGC TAAGGGATTTTCAGCTCTTCCTCCGGACACACCATGGGAAAAAGTTAGCGTATGGAGCACTTTCGCAACCTACATGTTCACTCTGCATATTCCATTGGGT ATTGGGGGCTTATCTCTTGCTTCCTACTTCTTGCAGCAGCCTGCTCTTGATCCAGATACTGAAACAGTGTCGTTGCTAATCGTCCAGATACTGGAACTTG GAGGGGCTTTGATTCTACTTAGCAGTACTGCTAAACCTGAAAAACACCAGTTGATCAACTTCTTCCAAGCTAACAAATCAAACAATGACAGAAACTGGGT GCTGGCATCAGCTTTGGGGTTCGGATTTCTCGTTCTGTTGATCCTCCTGACATCATTAGTTGCTGAGCACACAGATGGCTCCATGGATCCAACTGTGAAG GAGATTCTTCAGAGCAGCAACACATCGAAAGCCATCCTTTCCATTGTATACTGCATCACAACTCCCTTGCTAGAAGAAACAATCTACAGAGGGTTTCTAC TGACATCACTGACTTCCAGGACAAATTGGCAGCAGGGTGTGATCCTTAGCTCGGCATTCTTCAGCGCTGCTCACTTCTCCGCTGCGAATTTTGCGCAGTT GTTCGTAGTTGGATGCGTCCTGGGTTGCTGCTACACTTGGACAGGGAAATTGAGTTCTTCCATTGCAGTACACGCTCTGTACAATGCTGCTATACTGATC ATGACCACTTTTGTTCCTTAG
AA sequence Show only first row Show all	>Lus10018585 pacid=23180441 polypeptide=Lus10018585 locus=Lus10018585.g ID=Lus10018585.BGIv1.0 annot-version=v1.0 MILAAYWPAISILQSATKTKIPSTKIHPSSYVLRSRFHFTSSFRCPCSNGGSERESAAANKKATEIAKGFSALPPDTPWEKVSVWSTFATYMFTLHIPLG IGGLSLASYFLQQPALDPDTETVSLLIVQILELGGALILLSSTAKPEKHQLINFFQANKSNNDRNWVLASALGFGFLVLLILLTSLVAEHTDGSMDPTVK EILQSSNTSKAILSIVYCITTPLLEETIYRGFLLTSLTSRTNWQQGVILSSAFFSAAHFSAANFAQLFVVGCVLGCCYTWTGKLSSSIAVHALYNAAILI MTTFVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20725			CAAX amino terminal protease f...		Lus10018585 [exp]	0	1
AT4G29670		ACHT2	atypical CYS HIS rich thiored...		Lus10040554 [exp]	2.4	0.8919
AT1G56180			unknown protein		Lus10006532 [exp]	4.6	0.8949
AT4G01690		PPOX, HEMG1, PP...	Flavin containing amine oxidor...		Lus10007194 [exp]	5.5	0.8911
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10023530 [exp]	5.5	0.8674
AT2G24060			Translation initiation factor ...		Lus10035814 [exp]	9.2	0.8905
AT1G53250			unknown protein		Lus10042840 [exp]	10.8	0.8840
AT5G51545		LPA2	low psii accumulation2 (.1)		Lus10031710 [exp]	15.2	0.8889
AT5G11580			Regulator of chromosome conden...		Lus10038724 [exp]	15.9	0.8838
AT5G37360			unknown protein		Lus10004762 [exp]	18.1	0.8916
AT4G18975			Pentatricopeptide repeat (PPR)...		Lus10028526 [exp]	18.5	0.8671

Compare expression of checked genes

Lus10018585 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.